this study was carried out in order to compare the different types of biofertilizers carriers, storage temperature and storage duration on the survival and numbers of bacterial strains in biofertilizers. Fifty soil samples and 25 nodules samples were collected from Erbil city, Kurdistan Region, Iraq. Bacillus megaterium var. phosphaticum, Azotobacter chroococcum, Rhizobium leguminosarum were isolated, purified and then identified by biochemical tests, isolated bacteria were capable of fixing atmospheric nitrogen and dissolving phosphate in the soil. Chromosomal DNA located nif genes responsible for nitrogen-fixing from Azotobacter chrococcum as a donor cell transferred to Bacillus megaterium var. phosphticuom as recipient cell by conjugation process. Plasmid DNA of Rhizobium leguminosarum with nod genes transferred to the conjugated cells by transformation process. The cells containing symbiotic nod genes and non-symbiotic nif genes were obtained and having the ability to dissolve phosphate and fixing atmospheric nitrogen. To ensure the successful of gene transfer the PCR technique was performed. Four types of bacteria were carried on the three carriers with different structures (carrier 1 = CaCo3 20% + Charcoal 20%+ Compost 20% + Clay 20% + Sand 19% + Gum1% , carrier 2 = Clay 50% + Compost 20% + CaCo3 20% + Charcoal 20% + Gum1% and carrier 3 = Sodium Alginate Sodium alginate solution (6% w/v)), and incubated for 6 months at three temperatures (5 o C, 20 o C and 30 o C) and the bacterial number was enumerated monthly. The results indicated that the number of bacterial cells increased gradually up to 60 days of incubation, then decreased and reached to 13.250 x10 10 Cell /gm of carrier at the end of incubation time from 8.333 x10 10 Cell/gm of starting time, while the number of bacterial Cell in sodium alginate carrier remain stable and survive up to the end of the incubation time.