The supersonic–supersonic ejector–diffuser system is employed to suck supersonic low-pressure and low-temperature flow into a high-pressure environment. A new design of a supersonic–supersonic ejector–diffuser was introduced to verify pressure control performance under different operating conditions and vacuum background pressure. A 1D analysis was used to predict the geometrical structure of an ejector–diffuser with a rectangular section based on the given operating conditions. Different numbers and types of nozzle plates were designed and installed on the ejector to study the realizability of avoiding or postponing the aerodynamic choking phenomenon in the mixing section. The effects of different geometrical parameters on the operating performance of the ejector–diffuser system were discussed in detail. Experimental investigation of the effects of different types of nozzle plates and the back pressures on the pressure control performance of the designed ejector–diffuser system were performed in a straight-flow wind tunnel. The results showed that the position, type and number of the nozzle plates have a significant impact on the beginning of the formation of aerodynamic choking. The geometry of the ejector and the operating conditions, especially the backpressure and inlet pressure of the ejecting stream, determined the entrainment ratio of the two supersonic streams. The experimental results showed that long nozzle-plate had a better performance in terms of maintaining pressure stability in the test section, while short a nozzle-plate had a better pressure matching performance and could maintain a higher entrainment ratio under high backpressure conditions.