An open levee system is a traditional flood mitigation system for reducing the expansion of inland flooding and decreasing the peak flow. However, there have been few quantitative studies on its feasibility. Furthermore, the differences in applicability depending on the topography and the construction of continuous levees have not been fully examined. We studied its feasibility based on simulations in the Kuji River area, where the vast Typhoon Hagibis occurred. Morphological models representing the past (the 1940s) and the present (2019), obtained by modifying the highly accurate digital elevation models (DEM) via the tracing of aerial photos, were applied to a 2D unsteady flow simulation model to reveal the effects of the levee system on river hydrography and overland flood behavior. The results indicated that inundation flow through an open area decreased both inundation duration and depth, while the reduction of peak discharge is relatively insignificant at approximately 10%. The sub levees are not adequate under the current conditions and floodwater volume, and their effectiveness depends on the surrounding conditions, such as the development of continuous levees.