2 Poultry manure (PM) has been traditionally applied to crops for decades as an organic fertilizer, because it is a good and balanced source of plant nutrients. Its effect on plant growth and yield has been widely investigated and is well known. However, there has been little effort to relate elemental compositions of the manure applied to their concentrations in the plants. The objective of this study was to examine the effects of PM on the growth, and essential and non-essential element composition of pepper (Capsicum annuum) leaves and also fruits. Pepper plants were grown in soil with 0, 10, 20, and 40 g kg −1 PM under greenhouse conditions. Concentrations of nitrogen (N), phosphorus (P), potassium (K), calcium (Ca), magnesium (Mg), sulfur (S), silicon (Si), aluminum (Al), iron (Fe), zinc (Zn), copper (Cu), manganese (Mn), molybdenum (Mo), chloride (Cl), nickel (Ni), bromine (Br), rubidium (Rb), strontium (Sr), barium (Ba), lanthanum (La), and cerium (Ce) in leaves at the flowering stage and in fruits were determined by polarized energy dispersive X-ray fluorescence (PEDXRF). Poultry manure fertilization significantly improved pepper shoot growth and also fruit yield, and increased leaf and fruit P concentrations but not N, K, Mg, Si, Al, Ni, and Fe. Leaf Ca was significantly reduced by increased rate of PM application. Applied PM increased the concentrations of leaf and fruit Zn and Cl. Poultry manure applications had a positive effect on the concentrations of leaf Cu, and fruit Mn. The concentrations of Rb and Ce in fruits and Br in fruit and leaves were increased by PM treatments. Applied PM levels had no clear effect on the concentrations of Ba and La in pepper leaves. The leaf Ba was the highest with 10 g kg −1 PM, and leaf La was higher in 20 and 40 g kg −1 PM treatments than in the control.