Phosphorothioated oligonucleotides have a sequence-independent antiviral activity as amphipathic polymers (APs). The activity of these agents against herpesvirus infections in vitro and in vivo was investigated. The previously established sequence-independent, phosphorothioation-dependent antiviral activity of APs was confirmed in vitro by showing that a variety of equivalently sized homo-and heteropolymeric AP sequences were similarly active against herpes simplex virus type 1 (HSV-1) infection in vitro compared to the 40mer degenerate parent compound (REP 9), while the absence of phosphorothioation resulted in the loss of antiviral activity. In addition, REP 9 demonstrated in vitro activity against a broad spectrum of other herpesviruses: HSV-2 (50% effective concentration [EC 50 ], 0.02 to 0.06 M), human cytomegalovirus (EC 50 , 0.02 to 0.13 M), varicella zoster virus (EC 50 , <0.02 M), Epstein-Barr virus (EC 50 , 14.7 M) and human herpesvirus types 6A/B (EC 50 , 2.9 to 10.2 M). The murine microbicide model of genital HSV-2 was then used to evaluate in vivo activity. REP 9 (275 mg/ml) protected 75% of animals from disease and infection when provided 5 or 30 min prior to vaginal challenge. When an acid-stable analog (REP 9C) was used, 75% of mice were protected when treated with 240 mg/ml 5 min prior to infection (P < 0.001), while a lower dose (100 mg/ml) protected 100% of the mice (P < 0.001). The acid stable REP 9C formulation also provided protection at 30 min (83%, P < 0.001) and 60 min (50%, P ؍ 0.07) against disease. These observations suggest that APs may have microbicidal activity and potential as broad-spectrum antiherpetic agents and represent a novel class of agents that should be studied further.Microbicides are intended to prevent the transmission of sexually transmitted infections (STIs) from one sexual partner to another. The ideal microbicide would be completely safe and broadly effective against a variety of STIs (reviewed in reference 9). Despite recent setbacks, including failed trials of nonoxynol 9, Savvy (C31G), and cellulose sulfate (6), there are more than 30 other microbicides being investigated (9). Because genital herpes infections are not only one of the most common STIs but also have recently been shown to have profound effects on the spread of human immunodeficiency virus (HIV), they have been another major target for microbicides (reviewed in references 11 and 8). Thus, several preclinical microbicide evaluations have used animal models of genital herpes for the initial testing (20).Recently, the use of a novel class of compounds, phosphorothioate oligonucleotides (PS-ONs), has been suggested as a promising microbicide approach (17). The presence of sequence-independent antiviral activity with PS-ONs in HSV has been previously described (10,12,13). Recently, this sequenceindependent antiviral activity of PS-ONs was more clearly elucidated in HSV and other viruses (17,22,27) and was shown to be derived from the chemical nature of PS-ONs amphipathic polymers, independent of the ...