We have studied the effects of singlet oxygen produced by photodynamic action on the cyclosporin A-sensitive permeability transition (PT) in isolated rat liver mitochondria. Mitochondria were incubated with 3 M hematoporphyrin and irradiated at 365 nm with a fluence rate of 25 watts/m 2 . For short durations of irradiation (60 s) the adenine nucleotide translocase was inactivated, but mitochondria retained their ability to form a proton electrochemical gradient and accumulated Ca 2؉ and P i at the same rate as non-irradiated controls. Strikingly, however, the oxidative effects of photodynamic action prevented opening of the PT pore which is normally induced by Ca 2؉ plus P i or by treatment with diethyl pyrocarbonate (a histidine reagent) or diamide (a thiol oxidant). We show that the most likely targets for photodynamic action are critical histidines that undergo degradation. Irradiated, hematoporphyrinloaded mitochondria treated with diethyl pyrocarbonate or diamide still undergo the PT when treated with phenylarsine oxide, which reacts with a critical dithiol involved in pore modulation (Petronilli, V., Costantini, P., Scorrano, L., Colonna, R., Passamonti, S., and Bernardi, P. (1994) J. Biol. Chem. 269, 16638 -16642). These data suggest (i) that the dithiol cysteines are not oxidized by photodynamic action, but rather became inaccessible to oxidants; and (ii) that irradiation of hematoporphyrin-loaded mitochondria does not lead to pore denaturation, but rather to site-selective inactivation of discrete pore functional domains.When Ca 2ϩ -loaded mitochondria are treated with a variety of inducing agents, the opening of Ca 2ϩ -dependent pores leads to the so-called permeability transition of the inner membrane, which is specifically inhibited by nanomolar concentrations of cyclosporin A. Among Ca 2ϩ -dependent pore inducers, oxidizing agents have received considerable attention, and redox state changes of pyridine nucleotides, glutathione, or sulfhydryl groups have been shown to have a prominent role in the mechanism (or in the control) of Ca 2ϩ efflux following pore opening (for general reviews, see Refs. 1 and 2).In the present work, we have studied the effects of the very reactive species, singlet oxygen, 1 O 2 , on isolated rat liver mitochondria. The presence of 1 O 2 as a transient species able to damage cells, mainly at the mitochondrial level, can be observed in disease, such as in porphyria (3), and in the treatment of solid tumor by porphyrin photodynamic therapy (4). The effects of 1 O 2 on substrate transport, respiration, and phosphorylation are well documented, but few reports deal with those on the uptake and release of Ca 2ϩ from mitochondria (for a general review, see Ref. 5). In 1981 we have reported (6) that treatment with 1 O 2 produced by porphyrin photodynamic action can prevent Ca 2ϩ release due to membrane "damage" resulting from massive Ca 2ϩ loading. At that time, our interpretation was that such a release from Ca 2ϩ -overloaded mitochondria was probably of no physiological relevance....