Saccharomyces cerevisiae myristoyl-CoA:protein Nmyristoyltransferase (Nmt1p) is an essential 455-residue, monomeric enzyme that catalyzes the transfer of myristate from myristoyl-CoA to the NH 2 -terminal Gly residue of cellular proteins. Nmt1p has an ordered Bi Bi reaction mechanism with binding of myristoyl-CoA occurring before binding of peptide substrates. To define residues important for function, the polymerase chain reaction was used to generate random mutations in the NMT1 gene. A colony color sectoring assay was used to screen a library of 52,000 transformants for nmt1 alleles encoding enzymes with reduced activity. nmt1 alleles were identified that produced temperature-sensitive (ts) growth arrest due to substitutions affecting eight residues conserved in orthologous Nmts: 217 3 Arg produces 3-and 6-fold increases in K i for SC-58272 at 24 and 37°C but no change in K i for S-(2-oxo)pentadecylCoA, indicating that the substitution selectively affects Nmt1p's peptide binding site. Asn 426 3 Ile selectively perturbs the myristoyl-CoA binding site, resulting in the most pronounced reduction in affinity for S-(2-oxo)pentadecyl-CoA (12-and 20-fold). Ala 202 3 Thr, which confers the most severe ts phenotype, provides an example of a substitution that affects both sites, producing 3-and 6-fold increases in the K i for S-(2-oxo)pentadecyl-CoA and 6-and 9-fold increases in the K i for SC-58272 at 24 and 37°C. An N-myristoylation-dependent change in the electrophoretic mobility of Arf1p was used to assay the effects of the mutants on cellular levels of protein Nmyristoylation under a variety of growth conditions. The ts growth arrest produced by nmt1 alleles correlates with a reduction in myristoyl-Arf1p to 50% of total cellular Arf1p.