We demonstrated that during colonization with Streptococcus pneumoniae the nasal mucosal tissues of mice support two populations of pneumococci. Transparent-phase pneumococci can be readily washed from the outer surface, while a second population composed of primarily opaque-phase pneumococci is released only by homogenization of the nasal tissue. The fact that the opaque phase has previously been associated with invasion and the fact that opaque-phase pneumococci were released by homogenization of previously washed nasal tissue suggest that the opaque-phase pneumococci may have invaded the nasal tissue. Consistent with this hypothesis was our observation that there was inflammation in portions of the nasal mucosa of the colonized mice but not in the mucosa of noncolonized mice, but this observation did not prove the hypothesis. If the opaque-phase pneumococci released from the nasal tissue were from within the tissue and/or if resistance of the opaque-phase subpopulation to antibody, complement, and phagocytes is essential for long-term carriage, it seems likely that the virulence factors of S. pneumoniae that are necessary for killing humans exist to facilitate carriage. Although this speculation is unproven, the observation that there are separate populations of pneumococci during colonization may help guide future attempts to understand the biology of nasal colonization by this pathogen.Humans acquire Streptococcus pneumoniae invariably by asymptomatic nasal colonization (15). Transmission to others is thought to be primarily from colonized individuals. Even so, pneumococci possess virulence factors, including capsule, PspA, PspC, and pneumolysin, that allow them to resist the opsonic effects of complement deposition and thereby to avoid phagocytosis (1,10,22,26). These virulence factors enable pneumococci to cause invasive disease, which results in more human deaths in developed countries than result from any other bacterial pathogen (12). However, since the reservoir of pneumococci is maintained primarily by human nasopharyngeal colonization, virulence factors that interfere with complement and phagocytosis make little sense at the mucosal surface, where there is little complement (28) and there are few phagocytes. One possible explanation for why pneumococci contain these disease-permitting virulence factors is that longterm nasal colonization involves more than simple surface adherence and actually requires invasion of mucosal tissue, where the pathogen has to defend itself against complement-dependent opsonization and phagocytosis.Pneumococci have a phase shift that allows them to exist in transparent and opaque phases (36). Transparent-phase pneumococci have been shown to be released from nasal cavities of mice and infant rats by gentle washing with physiological salt solutions (36). In contrast, the majority of pneumococci recovered from the blood or lung are opaque-phase organisms (6,19,34). Moreover, it has been shown that nasal colonization in rodents is established more readily by transparent-phas...