Cell damage and death releases “alarmins”, or self-derived immunomodulatory molecules, that recruit and activate the immune system. Unfortunately, numerous processes critical to the transplantation of allogeneic materials result in the destruction of donor and recipient cells and may trigger alarmin release. Alarmins, often described as damage-associated molecular patterns (DAMPs), together with the exogenous pathogen-associated molecular patterns (PAMPs), are potent orchestrators of immune responses. Yet the precise role that alarmins play in the alloimmune responses remains relatively undefined. Here, we examine evolving concepts regarding how alarmins impact solid organ and allogeneic hematopoietic cell transplantation outcomes and the mechanisms by which self-molecules are released. We describe how once released, alarmins may act alone, or in conjunction with non-self materials, to contribute to cytokine networks controlling alloimmune responses and their intensity. It is becoming appreciated that this class of molecules has pleotropic functions and certain alarmins can promote both inflammatory and regulatory responses in transplant models. Emerging evidence indicates that alarmins and their receptors may be promising transplantation biomarkers. Developing the therapeutic ability to support alarmin regulatory mechanisms and use the predictive value of alarmin pathway biomarkers for early intervention may provide opportunities to benefit graft recipients.