Although available evidence from neurobiological studies consistently indicates that depression phenotypes are the outcome of a combination of genetic and environmental factors, 1,2) little is known about the pathophysiology of depression. A large number of clinical observations have suggested that stress is a predisposing factor involved in the onset of affective disorders, especially depression. [3][4][5] Most animal models of depression are based on behavioral deficits induced by a variety of stress paradigms. One of the most commonly used animal models of depression is a learned helplessness (LH) paradigm. In this paradigm, animals previously exposed to inescapable shock are subsequently less able to escape from shock than control animals. Animals with LH behavior exhibit impairments of behavioral, biochemical, physiological and hormonal parameters somewhat similar to those observed in patients with depressive disorders for several days.2,6-8) Interestingly, however, only 10-80% of animals exposed to inescapable shock develop LH behaviors. [9][10][11] The variability of responses in these animals may be due to several factors including procedures and condition of the induction of LH behaviors, the criteria used for defining LH behaviors 11) and also genetic variation. When we think about the variation from another viewpoint, clarifying the reason for this may give us information about endogenous factors that are involved in generation of depressive disorders. Therefore, in this article, we divided stressed animals into two groups which presented a symptom of depression and which did not show it, artificially, and examined the gene expression changes between.We previously found that antidepressant drugs and a traditional Chinese and Japanese prescription (Wakan-yaku) with antidepressant-like action enhances expression of BCL2/adenovirus E1B 19kD-interacting protein 3 (BNIP3) mRNA in a cultured cell line NG108-15. Our results suggest that BNIP3 is a candidate intrinsic factor related to antidepressive effects of these drugs.12) We also found that BNIP3 mRNA expression is upregulated by stress exposure and BNIP3 may be involved in imipramine-induced amelioration of depressive state of LH mouse brain.13) Using this model animal brain, it seems possible to find novel depressive factors in addition to BNIP-3.Microarray technology vastly improved brain research when it arrived some years ago and has become a very useful tool for identification of genes and molecular pathways involved in psychiatric disorders. [14][15][16] Further to understand the pathophysiology of depression, accumulation of gene expression analyses based on the phenotypic variability of animals exposed to stress is needed. In the present study, we investigated the expression of genes associated with the pathogenesis of depressive disorders using DNA microarray technique in the LH mice frontal cortex. Genes that were down-regulated or up-regulated were examined in detail by semi-quantitative reverse transcription-polymerase chain reaction (RT-PCR...