We investigate the dynamics of a Bose-Einstein condensate of magnetic atoms in which the dipoles are rotated by an external magnetic field. The time-averaged dipole-dipole interaction between the atoms is effectively tuned by this rotation, however recent experimental and theoretical developments show that dynamic instabilities emerge that may cause heating. We present simulations of a realistic tuning sequence in this system, and characterize the system behavior and the emergence of instabilities. Our results indicate that the instabilities develop more slowly as the rotation frequency increases, and indicate that experiments with tuned dipole-dipole interactions should be feasible.