Two novel mRNA transcripts have been identified that result from species-and tissue-specific, alternative polyadenylation and splicing of the pre-mRNA encoding the apolipoprotein B (apoB) editing catalytic subunit 1 (APOBEC-1) complementation factor (ACF) family of related proteins. The alternatively processed mRNAs encode 43-and 45-kDa proteins that are components of the previously identified p44 cluster of apoB RNA binding, editosomal proteins. Recombinant ACF45 displaced ACF64 and ACF43 in mooring sequence RNA binding but did not demonstrate strong binding to APOBEC-1. In contrast, ACF43 bound strongly to APOBEC-1 but demonstrated weak binding to mooring sequence RNA. Consequently ACF45/43 complemented APOBEC-1 in apoB mRNA editing with less efficiency than full-length ACF64. These data, together with the finding that all ACF variants were co-expressed in rat liver nuclei (the site of apoB mRNA editing), suggested that ACF variants might compete with one another for APOBEC-1 and apoB mRNA binding and thereby contribute to the regulation of apoB mRNA editing. In support for this hypothesis, the ratio of nuclear ACF65/64 to ACF45/43 decreased when hepatic editing was inhibited by fasting and increased when editing was re-stimulated by refeeding. These findings suggested a new model for the regulation of apoB mRNA editing in which the catalytic potential of editosomes is modulated at the level of their assembly by alterations in the relative abundance of multiple related RNA-binding auxiliary proteins and the expression level of APOBEC-1.Alternative mRNA polyadenylation, splicing, and mRNA editing are mechanisms of post-transcriptional RNA processing that introduce diversity in mammalian mRNAs, thereby regulating the number of structurally and functionally different proteins encoded by a single gene (reviewed in Refs. 1 and 2). Base modification RNA editing may involve the enzymatic deamination of single nucleotides within splice site consensus motifs (3) or in protein coding sequence, often with physiologically significant effects (4). Adenosine to inosine editing of mRNAs, such as that occurring on mRNAs encoding the glutamate-gated calcium channel and serotonin 2C receptor subunits, is mediated by a family of adenosine deaminases active on RNAs that function independently of cofactors to deaminate their cognate target within double-stranded RNA (reviewed in Ref. 5). Multiple cytidine deaminases active on RNA have been predicted through their homology with the zinc-dependent cytidine deaminase domain of the mRNA editing enzyme APO-BEC-1 1 (Ref. 6 and references therein); however, only APO-BEC-1 (7, 8) and CDD1 (9) have been shown to deaminate cytidines within mRNA. Unlike adenosine deaminases active on RNA, cytidine deaminases active on RNA minimally require RNA-binding auxiliary proteins for their activity on RNA.Cytidine to uridine deamination of nucleotide 6666 of apolipoprotein B mRNA occurs in the small intestine of all, and the livers of some, mammalian species (10 -12). The glutaminespecifying CAA codon...