A DNA endonuclease, Endo-I, which cleaves superhelical DNAs, has been isolated from avian myeloblastosis virions stripped of their coats by mild detergent treatment. The enzyme has a broad pH optimum around 7.5-8. 0 In cells infected with RNA tumor viruses, a superhelical DNA provirus is expressed in the nuclei and then integrated into the host genome (1-3). Several studies provide evidence that the superhelical form of the proviral DNA exists in the nucleus of the infected host (1-4) and is a prerequistite for the integration of viral information into the cellular genome (1). Enzymes have been implicated in the relaxation process of superhelical DNAs (5, 6) that potentially facilitates recombination and integration events (7-9). The introduction of a single-strand break in superhelical DNAs has been postulated as a requirement in the formation of a swivel required in DNA replication. DNA tumor virus endonucleases with specificity for single-stranded DNA (ssDNA) have also been implicated in such biological functions (6).In this report we describe two endonuclease activities that are present in viral cores and that utilize superhelical DNAs as substrates. The first activity, Endo-I, converts superhelical DNAs to the corresponding relaxed form. It requires Mg2+ for activity, and can be separated from the avian myeloblastosis virus (AMV) a/3 DNA polymerase (reverse transcriptase, RNA-dependent DNA nucleotidyltransferase). The second activity, Endo-I1, also converts superhelical DNAs to their relaxed form but remains associated with the AMV DNA polymerase and requires Mn2+ for activity.Several conditions that inhibit AMV a: DNA polymerase and RNase H activities also inhibited the Endo-II activity, but showed no effect on the Endo-I activity. A ) buffer containing 0.1 mM Na2EDTA, 2mM dithiothreitol, 0.02% Nonidet P-40, 0.4 M NaCl and layered onto a 10-30% (wt/vol) sucrose gradient in the same buffer and centrifuged at 100,000 X g at 4VC for 15 hr.Abbreviations: AMV, avian myeloblastosis virus; SV40, simian virus 40; ssDNA, single-stranded DNA; MaINEt, N-ethylmaleimide. t