Mycoplasma pulmonis is a natural rodent pathogen, considered a privileged model for studying respiratory mycoplasmosis. The complete genome of this bacterium, which belongs to the class Mollicutes, has recently been sequenced, but studying the role of specific genes requires improved genetic tools. In silico comparative analysis of sequenced mollicute genomes indicated the lack of conservation of gene order in the region containing the predicted origin of replication (oriC) and the existence, in most of the mollicute genomes examined, of putative DnaA boxes lying upstream and downstream from the dnaA gene. The predicted M. pulmonis oriC region was shown to be functional after cloning it into an artificial plasmid and after transformation of the mycoplasma, which was obtained with a frequency of 3 ؋ 10 ؊6 transformants/CFU/g of plasmid DNA. However, after a few in vitro passages, this plasmid integrated into the chromosomal oriC region. Reduction of this oriC region by subcloning experiments to the region either upstream or downstream from dnaA resulted in plasmids that failed to replicate in M. pulmonis, except when these two intergenic regions were cloned with the tetM determinant as a spacer in between them. An internal fragment of the M. pulmonis hemolysin A gene (hlyA) was cloned into this oriC plasmid, and the resulting construct was used to transform M. pulmonis. Targeted integration of this genetic element into the chromosomal hlyA by a single crossing over, which results in the disruption of the gene, could be documented. These mycoplasmal oriC plasmids may therefore become valuable tools for investigating the roles of specific genes, including those potentially implicated in pathogenesis.The mollicutes are the smallest free-living microorganisms capable of autoreplication (33). They are related to grampositive eubacteria from which they evolved by a drastic reduction of genome size, being thus considered the best representatives of the concept of a minimal cell. (964 kbp [5]). Postgenomic approaches aiming at deciphering the role of specific genes discovered by in silico analysis now require efficient strategies to genetically manipulate these organisms. The transposon Tn916 or Tn4001 can transpose in all the mollicute genomes, at least for the species amenable to transformation, such as M. genitalium, M. pneumoniae, and M. pulmonis. In M. genitalium and M. pneumoniae, a global approach of gene inactivation with the transposon Tn4001 was used to define the genes that are essential for the life of these bacteria (22). Derivatives of this transposon, obtained by insertion of a chloramphenicol acetyltransferase gene and the tetM tetracycline resistance determinant, were also shown to transpose in M. pulmonis (12). The use of these genetic elements for gene inactivation, which relies on the random insertion of the transposon in the genome of the organism, does not allow specific targeting of a gene of interest. In addition, the complementation of mutants would require the cloning and expression of genes in...