Resistance (the host's capacity to reduce parasite burden) and tolerance (the host's capacity to reduce impact on host health of a given parasite burden) manifest two different lines of immune defenses. In some host-parasite systems these two defenses are balanced against each other, while in others they are uncoupled. In hybrid hosts, resistance has sometimes been interpreted as having an effect on fitness without considering the modulatory effect of tolerance. Here, we used two closely related parasite species of genus Eimeria and measured proxies for resistance and tolerance in four wild-derived strains of inbred mice from two subspecies during controlled infection.We found a negative correlation between resistance and tolerance against E. falciformis, while the two are uncoupled against E. ferrisi. This might be explained by trade-offs, as resistance limits infection load and thereby the scope of possible tolerance, and both resistance and tolerance can be costly in terms of resource allocation. Resistance can be assumed to be limited by immunopathogenicity, tolerance by carrying capacity of the host or energy drained by the parasite.Findings of resistance in natural populations of hybrid mice have to be interpreted carefully in this context. Resistance and tolerance have to be studied in conjunction. 2019) which were also used for serial passaging of all the isolates. Parasite infective forms (oocysts) were recovered by flotation in saturated NaCl solution followed by washing and observation under light microscope (following the protocole described in Clerc, Fenton, Babayan, & Pedersen, 2019) and stored at room temperature in 1mL of 2% potassium dichromate for a maximum of 2 months before infection of the wild-derived mouse strains.Oocysts were allowed to sporulate 10 days before infection in a water bath at 30°C.