2022
DOI: 10.1101/2022.03.21.484343
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Interacting active surfaces: a model for three-dimensional cell aggregates

Abstract: We introduce a modelling and simulation framework for cell aggregates in three dimensions based on interacting active surfaces. Cell mechanics is captured by a physical description of the acto-myosin cortex that includes cortical flows, viscous forces, active tensions, and bending moments. Cells interact with each other via short-range forces capturing the effect of adhesion molecules. We discretise the model constitutive equations using a finite element method, and provide a parallel implementation in C++. W… Show more

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Cited by 5 publications
(4 citation statements)
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“…According to this model, a decrease in cell polarity would lead to a reduced ability to form strong actin fibres and to adapt to a lower-stiffness substrate surface. Mathematical models also suggest that stronger intercellular adhesion makes it easier for colonies to aggregate and form a circle [ 39 ]. In the present study, the decreased expression of intercellular adhesion factors was observed in hiPSCs cultured on iMatrix-221 but not on iMatrix-511.…”
Section: Resultsmentioning
confidence: 99%
“…According to this model, a decrease in cell polarity would lead to a reduced ability to form strong actin fibres and to adapt to a lower-stiffness substrate surface. Mathematical models also suggest that stronger intercellular adhesion makes it easier for colonies to aggregate and form a circle [ 39 ]. In the present study, the decreased expression of intercellular adhesion factors was observed in hiPSCs cultured on iMatrix-221 but not on iMatrix-511.…”
Section: Resultsmentioning
confidence: 99%
“…Furthermore, in a more general sense, SEM might be regarded as a class of models which describe the cellular body or intracellular structures of each cell, such as a cell surface (membrane and cortex) and a nucleus, by a certain meshwork of many nodes. This might include the model relying on the interconnected particles representing subcellular structures [29,30] and the continuous descriptions of cell surfaces implemented by triangularmesh discretizations or some finite-element discretization [154][155][156].…”
Section: Experimental Readouts For Comparisonmentioning
confidence: 99%
“…6a-c, Supplementary Information section 5.4). Simulations were performed using the Interacting Active Surfaces (IAS) numerical framework 17 (Fig. 4d, Supplementary Information, sections 7.1 and 7.2).…”
Section: An Active Surface Model Recapitulates Doublet Rotationmentioning
confidence: 99%