Werner syndrome is a human autosomal recessive disorder that displays symptoms of premature aging and an increased incidence of cancer (1). Cellular phenotypes of Werner syndrome include genomic instability (2-4), aberrant recombination (5-7), sensitivity to DNA-damaging agents (8 -11), and replication defects (12-14). The gene (WRN) defective in Werner syndrome encodes a protein that belongs to the RecQ family of DNA helicases (15) that includes four other human helicases, including the genes defective in the chromosomal instability disorders Bloom syndrome (BLM) (16) and Rothmund-Thomson syndrome (RecQL4) (17). In addition to the conserved helicase motifs, WRN contains a region of similarity to the 3Ј to 5Ј exonuclease domain of Escherichia coli DNA polymerase I and RNase D (18). In addition to its catalytic domains, WRN interacts with a number of proteins involved in DNA metabolism, suggesting important roles in cellular pathways of DNA replication, repair, and/or recombination (19,20).It is generally believed that RecQ helicases play an important role in the maintenance of genome stability (21-23); however, the precise molecular and cellular functions of RecQ helicases are not well understood. Although the DNA substrate specificity of WRN helicase has been studied in some detail (24), the mechanism by which WRN catalyzes DNA unwinding is not known. WRN, like all other DNA helicases characterized to date, utilizes the energy from nucleotide hydrolysis to unwind double-stranded DNA (25-28). Although the nucleotide preference of WRN helicase and exonuclease activities has been examined (29, 30), little is known about the optimal solution conditions for WRN catalytic activities. Recent work from the Kowalczykowski laboratory (31) demonstrated that E. coli RecQ helicase activity is sensitive to the ratio of magnesium ion to ATP concentration with an optimal ratio of 0.8 and a free magnesium ion concentration of 50 M. In addition, E. coli RecQ helicase activity displayed a sigmoidal dependence on ATP concentration, suggesting multiple interacting ATP sites (31). However, the assembly state of E. coli RecQ (32) and other RecQ helicases (33-37) remains open to debate.Since little is known about the cofactor requirements for WRN helicase and exonuclease activities, we examined these parameters in this study. Evidence is presented that WRN helicase behaves similarly to E. coli RecQ with respect to optimal Mg 2ϩ :ATP ratio for DNA unwinding but displays distinct differences with respect to the effects of free Mg 2ϩ ion and ATP concentrations on DNA unwinding activity. The ability of other divalent metals to substitute for magnesium in the WRN helicase reaction is metal-specific, and certain metal ions potently inhibited WRN helicase activity or stimulated WRN exonuclease activity. These results indicate that DNA metabolic processing by WRN helicase or exonuclease activities can be modulated by the availability of free metal ions.To better understand the WRN helicase mechanism, we utilized a fluorometric assay to monito...