This paper presents the characteristics of power supply protection in DC shipboard power systems utilising de-excitation of a synchronous generator, which have been used to achieve a breaker-less protection scheme. From state-of-the-art analyses on the de-excitation and the DC ship protection, the analytical expressions of a DC short-circuit fault are introduced with the consideration of the generator dynamics and the de-excitation. The rectifier protection, based on the analytical expression, is examined in terms of the peak fault current (or peak non-repetitive surge current) and the overloading capability (or limiting load integral) of the rectifier diodes. Finally, experimental DC short-circuit tests are conducted with the rectifier-generator system rated of 10 kW and 500 VDC. With the test results, the analytical expression derived in the paper is verified and, more importantly, the characteristics of the DC fault behaviours are discussed for different fault resistance, DC-link capacitance and exciter response.