FLT3 is a receptor tyrosine kinase that is expressed on early hematopoietic progenitor cells and plays an important role in stem cell survival and differentiation. Two different types of functionally important FLT3 mutations have been identified. Internal tandem duplication mutations arise from duplications of the juxtamembrane portion of the gene and result in constitutive activation of the FLT3 protein. This alteration has been identified in 铣20% to 30% of patients with acute myelogenous leukemia and appears to be associated with a worse prognosis. The second type of FLT3 mutation, missense mutations at aspartic acid residue 835, occurs in 铣7.0% of acute myelogenous leukemia cases. These mutations also appear to be activating and to portend a worse prognosis. Identification of FLT3 mutations is important because it provides prognostic information and may play a pivotal role in determining appropriate treatment options. We have developed an assay to identify both internal tandem duplication and D835 FLT3 mutations in a single multiplex polymerase chain reaction. After amplification, the polymerase chain reaction products are analyzed by capillary electrophoresis for length mutations and resistance to EcoRV digestion. Here we describe the performance characteristics of the assay, FMS-like tyrosine kinase 3 (FLT3 also known as STK1 and flk2) is a member of the class III receptor tyrosine kinase family that also includes PDGF-R, KIT, and FMS. 1 The FLT3 protein is normally expressed on hematopoietic stem progenitor cells and appears to play an important role in stem cell survival, and the development of dendritic and natural killer cells. 2,3 FLT3 is overexpressed in most cases of acute myeloid leukemia (AML). 4,5 In addition, analysis of leukemic blasts from AML patients has identified two specific somatic mutations of the FLT3 gene. 6,7 Identification of these mutations in AML patients provides independent prognostic information that may also prove important for treatment optimization.The first and best-studied FLT3 mutation is an internal tandem duplication (ITD) mutation. ITD mutations typically result from the duplication and tandem insertion of a portion of the juxtamembrane (JM) region (exons 11 to 12) of the FLT3 wild-type gene. 6 The lengths of the duplicated segments have been reported to range in size from 6 to 180 bases and are always in frame. 8,9 ITD mutations result in the constitutive autophosphorylation of the FLT3 receptor and are thus gain-of-function mutations of the FLT3 proto-oncogene. 10 FLT3 ITD mutations have been reported to occur in 20 to 30% of patients with AML and have been associated with an increased relapse risk, decreased disease-free survival, decreased event-free survival, and decreased overall survival. 8,9,11 In a multivariate analysis of FLT3 ITD mutations, cytogenetic risk group, presentation white blood cell count, percentage BM blasts at diagnosis, age, gender, and FAB type in 854 AML patients, the presence of a FLT3 ITD mutation was the most significant factor adversely a...