Internal transcribed spacer sequencing and metatranscriptomics analysis reveal the fungal community composition, diversity related environment variables and roles during serofluid dish fermentation

Methods applied in studies about fermented foods

“…Kimchi Korea Metabolomic analysis 23 Kombucha Ireland Metabolomic analysis 24 Milk kefir Turkey High-throughput sequencing 25 Noni juice (Morinda citrifolia L.) China Metatranscriptomic analysis 26 Pickled vegetables Africa/Asia Shotgun metagenomic sequencing 27 Serofluid dish China Metatranscriptomic analysis 28 Sourdough bread Brazil Metagenomic analysis 29 Sourdough bread China High-throughput sequencing 30 Tej (honey wine) India High-throughput sequencing 31 Toddy (palm wine) India Metagenomic analysis 32 Yucha (cooked rice and fresh food fermented) China Metagenomic sequencing and Metagenomic assembled genomes 21 Yu-lu (fish sauce) China Metagenomic analyses 33 Table Continued...…”

“…35 The technique has already been used, for example, to determine the microbial community and key metabolic functions involved in the fermentation of noni juice (Morinda citrifolia L.) 26 and in the evaluation of the role of fungi on carbohydrate and amino acid metabolism during the fermentation of vegetables for the production of serofluid dish, a typical fermented product from northwest China. 28 Metabolomics consists of the identification and quantification of all metabolites produced by microbial metabolism. Metabolomic analyses can be targeted (specific) or non-targeted (non-selective).…”