The appendix has historically been considered a rudimentary organ with an unknown function. Currently, its role in the human body has a special place. It has been proved that it is a "piggy bank" for commensal microorganisms and acts as an immunological organ. The impact of appendectomy on ulcerative colitis and Crohn’s disease has been debated for more than 30 years. Removal of the appendix at an early age has been reported to reduce the risk of ulcerative colitis but lead to a progressive course of Crohn’s disease. These observations led to the postulate that there may be an association between appendectomy and inflammatory bowel disease that can be explained by the immunomodulatory effect of surgery. There is still no definitive evidence of a protective or damaging role of the appendix in inflammatory bowel disease, which is a prospect for future research.