Microscopically, modern tufas, sinters, and travertines (TSTs) may contain filaments, spirilla, clotted micrite (peloids and/or grumeleuse), tubules, coccoids, or spheres that suggest a biological component to their constitution. However, examination of progressively older TST deposits reveals that the preservation of primary depositional features, including biological morphologies, is commonly obscured by diagenetic overprinting that may mask or obliterate original features. In the study reported here, we examined modern and ancient spring deposits to determine which biological morphologies remain identifiable through geologic time. The focus is on the preservation potential of fossil microorganisms, independent of the mineralogy or formation temperature of the original TST. Biologically induced biomineralization likely fossilizes microorganisms in situ within TST deposits. Biofilms, composed primarily of extracellular polymeric substances, bind calcium or silica ions, serve as nucleation sites, and change local microchemistries to favor precipitation of calcite, aragonite, or chert (less commonly, other minerals). The resultant precipitation entombs microbial material and may yield a fossilized remnant of the microbe's former presence, albeit lacking details beyond general morphology. The preserved dimensions are almost always larger than those of the original microorganism. Recrystallization and the formation of cement, either calcite (or aragonite) or silica, are diagenetic processes that may occur early and rapidly, with resultant blurring of primary fabrics. Curiously, the commonly recognized spherule and coccoid forms from Holocene and Cenozoic deposits are rarely observable in Mesozoic and Paleozoic deposits, except as indistinct clots in thin section or as rounded mineralized forms. Filaments, however, retain much of their original dimensions, particularly their diameter, and if discovered stretching across a primary pore space may be considered one of the more reliable indicators of former microbial activity in ancient spring deposits.