2014
DOI: 10.1186/s40555-014-0052-0
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Invasive lumbricid earthworms of Kamchatka (Oligochaeta)

Abstract: Background: Invasive earthworms often have huge ecological impact, especially when they colonize previously earthworm-free zones. Kamchatka is a remote and weakly populated region whose invertebrate fauna is insufficiently studied. We investigated earthworm diversity in several natural and anthropogenic habitats of Kamchatka by morphological analysis and barcoding using the mitochondrial cox1 gene. Results: We added four new species (Dendrobaena octaedra, Dendrobaena attemsi, Lumbricus rubellus, and Aporrectod… Show more

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Cited by 16 publications
(11 citation statements)
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“…Genomic DNA was iso lated, and fragments of the mitochondrial gene of cytochrome oxidase 1 (cox1) were amplified. All experimental procedures were described previously [8]. In some cases, at shortage of the amount of ampli fied fragments, additional PCR was performed with the primers LCO FE (5' AAATC ACAAA GATAT TGGCA CTCT 3') and HCO FE (5' TGGGT GTCCG AAGAA TCAGA ATA 3') specially elabo rated for this lineage of E. n. nordenskioldi.…”
mentioning
confidence: 99%
“…Genomic DNA was iso lated, and fragments of the mitochondrial gene of cytochrome oxidase 1 (cox1) were amplified. All experimental procedures were described previously [8]. In some cases, at shortage of the amount of ampli fied fragments, additional PCR was performed with the primers LCO FE (5' AAATC ACAAA GATAT TGGCA CTCT 3') and HCO FE (5' TGGGT GTCCG AAGAA TCAGA ATA 3') specially elabo rated for this lineage of E. n. nordenskioldi.…”
mentioning
confidence: 99%
“…Capillary electrophoresis of the sequencing products was performed in the Novosibirsk Sequencing Center. All sequences obtained in this study were deposited in GenBank under accession numbers KF471778-KF471786, KF471793-KF471830, KF471843-KF472049, KU358729-KU35 8873, and KP789177-KP789310; accessions KF471 787-92 and KF471831-KF471842 were published earlier in Shekhovtsov et al (2014).…”
Section: Methodsmentioning
confidence: 99%
“…Для амплификации фрагмента гена гистона H3 приме няли универсальные праймеры H3aF (5′ATGGCTCGTA CCAAGCAGACVGC3′) и H3aR (5′ATATCCTTRG GCATRATRGTGAC3′), взятые из работы (Colgan et al, 1998) Для анализа данных были взяты последовательно сти cox1 A. c. caliginosa, опубликованные в наших преды дущих работах: KP789177-KP789310, KF471787-92, KF471831-KF471842 (Shekhovtsov et al, 2014a); KF471778-KF471786, KF471793-KF471830, KF471843-KF472049, KU358729-KU358873 (Shekhovtsov et al, 2016a). Кроме того, исследованная выборка включала в себя последова тельности из статей (Porco et al, 2013;Martinsson et al, 2015).…”
Section: материалы и методыunclassified