Cores from Arctic and subarctic Canadian lakes were subjected to isotopic, chemical, micropaleontological, and geochronological analyses for the purpose of investigating massindependent fractionation (MIF) of mercury isotopes. The cores preserved records of early twentieth century climatic warming (~1915-1940), subsequent cooling (~1940-1970), and renewed warming (~1970-2004) [phases W1, C1, and W2, respectively]. Per mil deviations of 199 Hg/ 202 Hg and 201 Hg/ 202 Hg ratios due to MIF (Δ 199 Hg and Δ 201 Hg values) correlated with biological and biogeochemical factors linked to geographical and temporal climatic variations but varied, in large part, independently of each other. Δ 201 Hg tended to increase from east to west. Among subarctic lakes this trend paralleled westward decreases in annual precipitation, diatom concentration, and the post-1990 organic carbon/pre-1900 organic carbon ratio, and Δ 201 Hg increased in the order C1 ≤ W1 < W2. Δ 201 Hg varied inversely with diatom concentration, but Δ 199 Hg increased with increasing abundance of cyanobacteria. Arctic lakes, however, showed a south-to-north decrease in Δ 199 Hg/Δ 201 Hg ratios, paralleling a decrease in ACCEPTED MANUSCRIPT ACCEPTED MANUSCRIPT 2 annual precipitation and an increase in Chlorophyta and cyanobacteria. Δ-values of individual lakes depended on the abundances of specific phylogenetic groups of phytoplankton, pyrolysis products of organic matter, and manganese, and on the manganese/iron ratios of oxyhydroxides, displaying clear separation of data representing different climatic trends. These results suggest that MIF was caused by microorganisms, such as bacteria which decomposed dead phytoplankton and mediated oxidation-reduction reactions of manganese and iron, and that the nature and isotope-fractionating activities of the microflora varied with climate-related environmental and biotic factors, including the community structure of the phytoplankton.