This study examines the three-dimensional layered air temperature variations associated with the Hualian M6.9 earthquake, which occurred on 18 September 2022, using data from the National Center for Environmental Prediction (NCEP) and extracting background information for air temperature through tidal forces. Changes in air temperature stratification revealed that near the epicenter, temperature anomalies began on 12 September and peaked on 13 September, with pronounced increases in magnitude and area. These anomalies followed a seismic thermal anomaly pattern, i.e., one with greater amplitude and a wider range near the land surface, decreasing with altitude until they dissipated, while the other exhibited high atmospheric temperature anomalies, i.e., the upper atmospheric warming exceeded that near the land surface, likely due to meteorological factors. Stable weather conditions and a low geomagnetic Kp index and Dst index during the research period supported the reliability of these findings. The deformation field recorded by InSAR reflects crustal deformation directly caused by fault slip and stress accumulation; moreover, the area with significantly higher air temperature coincides with the areas with the most concentrated deformation.