The environmental damage stemming from traditional diesel begins during crude oil extraction and persists throughout its usage. The burning of fossil fuels has further deteriorate the environmental effect and added to global warming by emitting harmful substances. Moreover, the reduction of finite fossil fuel reserves due to widespread extraction has made the adoption of renewable resources essential. Given these considerations, biodiesel emerges as a highly promising alternative to conventional diesel due to its environmentally beneficial nature, renewable source, and economic feasibility. In this study, biodiesel was prepared by a microwave reactor in the presence of potassium methoxide using blended waste palm oil and sterculia foetida. The effects of raw materials characteristics on transesterification products were studied. The studied process parameters were methanol/oil ratio, microwave temperature, catalyst concentration, reaction time, and stirring speed. The optimal yield with 98.5% FAME content was obtained at a methanol/oil ratio of 60 vol. %, microwave temperature of 120 °C, catalyst concentration of 0.3 wt.%, and 3 min reaction time, and stirring speed of 500 rpm. The potassium methoxide was used to catalyse the transesterification process. The physicochemical properties and the fatty acid methyl ester composition were discussed thoroughly. The flash point of biodiesel, at 157.5°C, exceeds that of diesel fuel by more than two times. The cetane index is 59.5 which is higher than diesel (49.6). The biodiesel’s fuel properties conformed to the requirements of both ASTM D6751 and EN 14214. High biodiesel conversion and low sulphur content show that waste palm oil and sterculia foetida are sustainable and economical feedstocks that produce clean fuel to aid the feasibility of the energy transition of the global energy sector. In addition, the selection of synthesis approaches can be further explored for potential catalysts to ensure eco-green biodiesel’s sustainability with minimised.