Abstract. Three years of greenhouse gas measurements, obtained using a gas chromatograph (GC) system located at the Puy de Dôme station at 1465 m a.s.l. in central France, are presented. The GC system was installed in 2010 at Puy de Dôme and was designed for automatic and accurate semicontinuous measurements of atmospheric carbon dioxide, methane, nitrous oxide and sulfur hexafluoride mole fractions. We present in detail the instrumental setup and the calibration strategy, which together allow the GC to reach repeatabilities of 0.1 µmol mol −1 , 1.2 nmol mol −1 , 0.3 nmol mol −1 and 0.06 pmol mol −1 for CO 2 , CH 4 , N 2 O and SF 6 , respectively. The analysis of the 3-year atmospheric time series revealed how the planetary boundary layer height drives the mole fractions observed at a mountain site such as Puy de Dôme where air masses alternate between the planetary boundary layer and the free troposphere.Accurate long-lived greenhouse gas measurements collocated with 222 Rn measurements as an atmospheric tracer allowed us to determine the CO 2 , CH 4 and N 2 O emissions in the catchment area of the station. The derived CO 2 surface flux revealed a clear seasonal cycle, with net uptake by plant assimilation in the spring and net emission caused by the biosphere and burning of fossil fuel during the remainder of the year. We calculated a mean annual CO 2 flux of 1310 ± 680 t CO 2 km −2 . The derived CH 4 and N 2 O emissions in the station catchment area were 7.0 ± 4.0 t CH 4 km −2 yr −1 and 1.8 ± 1.0 t N 2 O km −2 yr −1 , respectively. Our derived annual CH 4 flux is in agreement with the national French inventory, whereas our derived N 2 O flux is 5 times larger than the same inventory.