Primary angle-closure glaucoma (PACG) is a major cause of blindness worldwide, with a particularly high prevalence in Asian populations. Laser iridotomy (LI) has been the standard therapeutic modality for the treatment of PACG to avoid blindness. However, physiological mechanism of LI has not been fully understood, due to the complex structure of the eyeball, the fluidity of aqueous, and the limitation of detecting equipment. It will increase the difficulty of surgery and the probability of complications. Based on the above reason, numerical analysis was conducted to investigate the aqueous humor flow under different physiological structures before and after laser surgery. It will be helpful to explore the pathological cause of primary angle-closure glaucoma, prevent the complications of laser iridotomy, and provide new ideas for clinical guidance. In this paper, the main flow domain of aqueous humor was modelled by three kinds of structure of eyeball according to the physiological theory of the treatment process. They were normal eyeball, eyeball with the physiological structure of shallow anterior chamber depth and narrow angle and eyeball after laser iridotomy treatment. The finite volume method was used to discretize the computational model area. The flow of aqueous humor is simulated. The results showed that, 1) the geometric model of physiological structure of shallow anterior chamber depth was very important for theoretical study of glaucoma. When the depth of anterior chamber decreased from 2.8 mm to 2.0 mm, the maximum velocity of natural convection doubled, and the pressure difference of shallow anterior chamber increased by 20%. 2)Pupil block increases intraocular pressure sharply, which is equivalent to thousands of times the normal pressure, causing damage to intraocular tissues. 3)Laser iridectomy can effectively reduce the intraocular pressure caused by pupil block, but the velocity of aqueous humor after operation is 40 times of normal speed, and the increase of corneal shear stress leads to corneal damage.