The influenza virus polymerase is a heterotrimer formed by the PB1, PB2 and PA subunits and is responsible for virus transcription and replication. We have expressed the virus polymerase complex by co-transfection of the subunit cDNAs, one of which was tandem affinity purification (TAP)-tagged, into human cells. The intracellular polymerase complexes were purified by the TAP approach, involving two affinity chromatography steps, IgG-Sepharose and calmodulin-agarose. Gel-filtration analysis indicated that, although most of the purified polymerase behaved as a heterotrimer, a significant proportion of the purified material migrated as polymerase dimers, trimers and higher oligomers. Co-purification of polymerase complexes alternatively tagged in the same subunit confirmed that the polymerase complex might form oligomers intracellularly. The implications of this observation for virus infection are discussed.The influenza A viruses belong to the family Orthomyxoviridae and contain a segmented genome formed by eight single-stranded RNA molecules of negative polarity (reviewed by Elton et al., 2005;Neumann et al., 2004;Palese & Shaw, 2006). The molecular machines responsible for transcription and replication of the virus genome are the ribonucleoprotein (RNP) complexes, each one containing one RNA segment associated to nucleoprotein (NP) monomers and the polymerase complex (Klumpp et al., 1997;Martín-Benito et al., 2001;Ortega et al., 2000). The enzyme responsible for virus RNA synthesis is the RNA polymerase, a heterotrimer composed of the PB1, PB2 and PA subunits. PB1 is the structural core of the complex (Digard et al., 1989) and contains the polymerase and endonuclease activities. PB2 is responsible for cap recognition during transcription initiation and PA is a phosphoprotein with protease activity involved in RNA replication (reviewed by Elton et al., 2005;Palese & Shaw, 2006). The virus polymerase complex is a very compact structure (Area et al., 2004;Torreira et al., 2007) and mutations in the various subunits may alter either transcription or replication (Fodor et al., 2002;Gastaminza et al., 2003;Hara et al., 2006). The first step in virus gene expression is the primary transcription of virion RNPs. The RNP-associated viral polymerase recognizes cellular pre-mRNAs and cleaves them at 10-15 nt downstream of the cap, thereby generating cap-containing primers for virus mRNA synthesis (Bouloy et al., 1978;Krug et al., 1979). Virus transcription is terminated by reiterate copy of an oligo-U signal located close to the 59 terminus of the template, which results in the synthesis of a 39-terminal poly(A) tail (Poon et al., 1999;Robertson et al., 1981). On the contrary, replication of viral RNPs does not require capped primers and occurs by the synthesis of a complementary RNA (cRNA) intermediate, which is a complete copy of the virion RNA (vRNA) (Hay et al., 1982), and serves as template for the generation of progeny vRNAs. Both vRNAs and cRNAs are encapsidated into RNP structures during replication (reviewed by Elt...