The Gly388Arg polymorphism in the fibroblast growth factor receptor 4 (FGFR4) gene has been reported to influence prognosis in a wide variety of cancer types. To determine whether Gly388Arg is a marker for lung cancer prognosis, we genotyped 619 lung cancer patients with incident disease and examined the relationship between genotype and overall survival. While we employed a comprehensive set of statistical tests, including those sensitive to the detection of differences in early survival, our data provide little evidence to support the tenet that the FGFR4 Gly388Arg polymorphism is a clinically useful marker for lung cancer prognosis. British Journal of Cancer (2007Cancer ( ) 96, 1904Cancer ( -1907 (Parkin et al, 2005). Despite recent improvements in treatment, the prognosis has only marginally improved and 5-year survival rates from both small-(SCLC) and non-small-cell lung cancer (NSCLC) are generally no better than 15% (Cancer Research UK). While the major prognostic determinant is stage at presentation, there is variability in survival for patients with same-stage disease, making it highly advantageous to identify further prognostic markers, which may predict patients likely to benefit from treatment. Furthermore, detecting genes with prognostic relevance has the potential to aid the identification of pathways that may be targeted for therapeutic interventions.The FGF/FGFR receptor (FGFR) signalling pathway plays a pivotal role in cellular biology, being involved in differentiation, angiogenesis and motility (reviewed in Powers et al (2000)). Dysregulation of this pathway is a feature of a number of tumours and allelic imbalance at several FGF/FGFR loci is common in lung cancer. Correlations between such changes and lymph node status in cancer has been reported (Beau-Faller et al, 2003), implying that FGF/FGFR signalling may play an important role in the growth and survival of cancer cells.A specific role for FGFR4 in cancer is not well established, but altered expression has been documented in breast, lung, pancreatic and prostate cancers (Bange et al, 2002;Shah et al, 2002;Nakamura et al, 2004;Wang et al, 2004). Recently, a common polymorphism in the transmembrane domain of the FGFR4 gene, Gly388Arg, has been reported to correlate with tumour aggressiveness (lymph node metastasis, advanced stage at presentation and reduced survival in several cancer types, including breast, sarcoma, lung and prostate (Bange et al, 2002;Morimoto et al, 2003;Nakamura et al, 2004;Wang et al, 2004;Spinola et al, 2005a)). Some of these studies were, however, conducted on relatively small sample sizes and subsequent studies of breast, colon, head and neck, and bladder cancers (Becker et al, 2003;Jezequel et al, 2004;Streit et al, 2004;Spinola et al, 2005b;Yang et al, 2006), have provided little support for an association between FGFR4 Gly388Arg genotype and prognosis.To evaluate the prognostic significance of the FGFR4 Gly388Arg polymorphism in lung cancer, we analysed a cohort of 619 lung cancer patients. We employed a compr...