2022
DOI: 10.1007/s00436-022-07552-1
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Is Gymnophallus Odhner, 1900 (Trematoda: Gymnophallidae) polyphyletic? A new hypothesis based on phylogenetic position of Gymnophallus deliciosus (Olsson, 1893)

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“…To assess the phylogenetic affinities of nominal stenakrine taxa, maximum likelihood and Bayesian inference analyses were performed against a concatenated 18S + 28S alignment including the novel data as well as other relevant sequences from GenBank. Sequences for general alignment of the main subfamilies/clades, including the Opecoelidae, other xiphidiate families belonging to the Gorgoderoidea, Haploporoidea, Troglotrematoidea, Microphalloidea, Plagiorchioidea and Brachycladioidea, as well as non-xiphidiate taxa including from the Monorchiata, Lepocreadiata, Opisthorchiata, Apocreadiata, Gymnophallata, and Hemiurata were downloaded from GenBank database [3,8,9,11,18,20,22,27,[30][31][32][33][34][35][36][37][38][39][40][41][42][43][44] with custom R script [45] based on the "ape" package [46]. To concatenate sequences of 18S and 28S rRNA genes "catfasta2phyml.pl" script [47] was used with "-f" parameter.…”
Section: Phylogenetic Analysismentioning
confidence: 99%
“…To assess the phylogenetic affinities of nominal stenakrine taxa, maximum likelihood and Bayesian inference analyses were performed against a concatenated 18S + 28S alignment including the novel data as well as other relevant sequences from GenBank. Sequences for general alignment of the main subfamilies/clades, including the Opecoelidae, other xiphidiate families belonging to the Gorgoderoidea, Haploporoidea, Troglotrematoidea, Microphalloidea, Plagiorchioidea and Brachycladioidea, as well as non-xiphidiate taxa including from the Monorchiata, Lepocreadiata, Opisthorchiata, Apocreadiata, Gymnophallata, and Hemiurata were downloaded from GenBank database [3,8,9,11,18,20,22,27,[30][31][32][33][34][35][36][37][38][39][40][41][42][43][44] with custom R script [45] based on the "ape" package [46]. To concatenate sequences of 18S and 28S rRNA genes "catfasta2phyml.pl" script [47] was used with "-f" parameter.…”
Section: Phylogenetic Analysismentioning
confidence: 99%