The color of apple skin, particularly anthocyanin-based coloration,
is a key factor determining market acceptance. The mechanisms of anthocyanin
accumulation in apples with different skin color patterns (i.e., striped
and blushed) were analyzed. In total, 14 anthocyanins and 5 procyanidins
were simultaneously assayed in red blushed-skin mutants (CF-B1 and
CF-B2) and red striped-skin parents (CF-S1 and CF-S2), and 13 significant
differences were revealed. Anthocyanin accumulation was significantly
higher in the red blushed-skin apples than it was in the parents.
The transcript levels of anthocyanin biosynthesis genes and regulatory
factors (MdMYB10, MdbHLH3, and MdWD40) were associated with different skin color patterns
during the coloring period at 4, 6, and 8 days after the fruits were
debagged. The methylation levels of the MdMYB10 promoter
regions −1203 to −779 bp, −1667 to −1180
bp, and −2295 to −1929 bp were associated with different
skin color patterns, and there was more methylation in red striped-skin
apples. These results improve our understanding of anthocyanin accumulation
and its underlying molecular mechanism in apples with different skin
color patterns, thereby providing valuable information for apple breeding.