Primary biliary cholangitis (PBC) and primary sclerosing cholangitis (PSC) are idiopathic and progressive autoimmune hepatobiliary disorders that lead to liver failure and a need for liver transplantation in a proportion of individuals with poorly controlled disease. It is currently thought that an environmental agent triggers disease in a genetically susceptible host and to date, xenobiotics, bacteria and a human betaretrovirus have all been linked with PBC. However, there is no consensus on which agents predominates. These disease processes are poorly understood and there are disparate hypotheses concerning the pathogenesis. One theory suggests that the disease is mediated by autoimmunity, whereas others have speculated that they are infectious disease processes that only manifest in individuals with diminished immunity. Clinically, the triggers of disease are difficult to study because of the indolent onset and chronic nature of the disorders. Notably, observations from liver transplantation provide a unique insight into the development of PBC and PSC. Both biliary disorders may reoccur in up to 30%-50% of patients following liver transplantation and many of the factors that influence recurrence have been well described. Prior to transplantation, immunosuppression is not routinely used to treat PBC and PSC because specific treatments have not been shown to have utility or have caused undue side effects. Following