The use of intrinsic fluorescence to study cellular metabolic components has been explored since the 1950s [8][9][10]. Remote, realtime detection and quantification of live cells, dead cells, and spores in fluids (air, water) and on surfaces and sub-surfaces (like those of food, surgical theaters, soils, rock, ice) at low concentrations has been demonstrated [11][12][13]. Some microbes have demonstrated specific fluorescence signatures that depend on their environment or growth conditions [14], e.g., Escherichia coli, Enterococcus faecalis and Staphylococcus aureus in otitis media and contamination source tracking of several Pseudomonas spp. in dairy products [15]. Our approach makes use of the following metabolic intrinsic fluorescence signatures to detect the presence of microbes that are present under physiological conditions: reduced pyridine nucleotides (RPNs), flavins, cytochromes, calcium dipicolinic acid (DPA) and others [11][12][13][15][16][17]. Metabolic signals, which are indicators of live cells, fluoresce in the bluegreen region with 340-360 nm excitations. The fluorescence emitted is directly proportional to the concentration of metabolites and thus to the average number of live cells [11]. Flavins and protoporphyrin IX, which also fluoresce in the red region upon 565-595 nm excitations, are found in both live and dead cells. Cytochromes fluoresce in the near IR upon 610-640 nm excitations. Excitations in the deep UV (e.g., 250-300