The pathogenesis-related (PR) protein superfamily is widely distributed in the animal, plant, and fungal kingdoms and is implicated in human brain tumor growth and plant pathogenesis. The precise biological activity of PR proteins, however, has remained elusive. Here we report the characterization, cloning and structural homology modeling of Tex31 from the venom duct of Conus textile. Tex31 was isolated to >95% purity by activityguided fractionation using a para-nitroanilide substrate based on the putative cleavage site residues found in the propeptide precursor of conotoxin TxVIA. Tex31 requires four residues including a leucine N-terminal of the cleavage site for efficient substrate processing. The sequence of Tex31 was determined using two degenerate PCR primers designed from N-terminal and tryptic digest Edman sequences. A BLAST search revealed that Tex31 was a member of the PR protein superfamily and most closely related to the CRISP family of mammalian proteins that have a cysteine-rich C-terminal tail. A homology model constructed from two PR proteins revealed that the likely catalytic residues in Tex31 fall within a structurally conserved domain found in PR proteins. Thus, it is possible that other PR proteins may also be substrate-specific proteases.Of the genomes that have been completely sequenced, as many as 2% of the gene products encode known proteases, many of which regulate physiological processes such as blood coagulation, fibrinolysis, the complement system, and the processing of protein hormone precursors by specific convertases. Prohormones and neuropeptides (3-40 amino acids), important coordinators of cellular function in the endocrine and nervous systems, are often synthesized as propeptides. The propeptide is subsequently processed by substrate-specific proteases to yield the mature bioactive form (1). As many of the substratespecific proteases remain unidentified, predicting new bioactive peptides from cDNA sequences is presently difficult, if not impossible (2, 3). Linderström-Lang coined the term "limited proteolysis" to describe enzymes with restricted specificity (4). Enzyme activity can be restricted by substrate structure, enzyme processing state, endogenous protease inhibitor levels or a combination of these factors (5). Peptides derived from prohormones are typically flanked by a pair of dibasic residues (Lys-Arg, Arg-Arg, Lys-Lys, or Arg-Lys) and are cleaved by proteases found in secretory vesicles (1). However, many precursor peptides contain multiple sets of basic residues, suggesting that highly substrate specific or differentially expressed proteases can determine processing outcomes.The venom of cone snails (predatory marine molluscs of the genus Conus) has yielded a rich source of novel neuroactive peptides ("conotoxins") (6). However, the enzymes responsible for cleaving the conotoxins from their propeptide precursors have not been isolated. Here we report the purification, cloning, and initial characterization of Tex31, a protease from venom Conus textile. Interestingly,...