Three nuclease activites have been found and characterized in rat thymocyte nuclear extracts. A Mn2+-dependent nuclease is loosely bound to nuclear components and can be extracted with 0.35 M NaCI. The enzyme is activated by MnZ+ but not by Mg", Ca2+, or both. Its molecular mass is 36-40 kDa when measured by gel filtration and 37 kDa by SDSPAGE. An acidic nuclease is independent of divalent ions, produces DNA strand breaks with 5'-OH ends, its molecular mass is about 37 kDa. Two fractions of Ca2+Nn2+-dependent nuclease, differing in binding to CM-Sepharose but identical in other respects, are active in the presence of Mn2+ but can be additionally activated by Ca2+. They are inactive in the presence of Mg'' or Ca2+ but cleave DNA in Ca2'/Mg2'-containing medium. The molecular mass of the enzyme is 22 kDa as determined by both gel filtration and electrophoresis. The dependence of nuclease activities on pH, ions, and sulfhydryl reagents is described. Cycloheximide injection to both control and irradiated animals strongly inhibits the activities of Ca2+/Mn2+-dependent nuclease from thymocyte nuclei separated by chromatography on CMSepharose and does not change the activities of Mn2+-dependent and acidic nucleases. Nuclease activity in thymocyte nuclei from irradiated rats is increased in CaZ+Ng2'-containing and Ca2+/ Mn"-containing media whereas there is no change in the activity of acidic nuclease. CaZ+/Mn2+-dependent nuclease is extracted from thymocyte nuclei of irradiated rats with 0.35 M NaCl but from control nuclei only with 0.5 M NaCl. Possible reasons of labilization of Ca*+Nn*+-dependentnuclease binding to the nuclear structures in dying thymocytes are discussed.In the past decade the concept has been formulated that in most cases the death of cells is the result of their active response to physiological or damaging factors [ 1 -31. This type of cell death was called apoptosis [l] and the recent literatur data suggests that, besides the programmed and physiological cell death [l -31, cell death [5-81. Data indicate the involvement of nuclear nucleases, particularly, Ca2+Ng2+-dependent endonuclease [7, 21 -241 but the mechanism of itdtheir activation in dying cells remain unclear. A number of preparations of this enzyme were purified from different sources but they usually differed in molecular mass, substrate specificity, binding to ion-exchange columns and so on [25-301. Ca2+/Mg2+-nucleases with molecular masses in the range 25-120 kDa with preference for single-stranded or double-stranded DNA are described. The mechanisms of regulation of the nuclease activity are poorly understood. Even the ion dependence of the nuclease differs between various studies. The enzyme is normally inactive in the presence of Mg2+ or Ca" only but is activated by addition of both ions. At the same time the nuclease is normally active in the presence of Mn2+ and the maximal activity is manifested with Mn' + and Caz+ [25, 301. Previously it has been shown that there are different nucleases in rat thymus nuclei but only a CaZ...