Random peptide libraries are displayed on filamentous bacteriophage as fusions to either the minor coat protein, pIII, or the major coat protein, pVIII. We have devised a means of isolating the peptide displayed on a phage clone by transferring it to the N-terminus of the maltose-binding protein (MBP) of Escherichia coli encoded by malE. Transfer of a peptide sequence to monomeric MBP eliminates phage-encoded amino acids downstream of the insert peptide as well as avidity effects caused by multivalent display on phage. Peptide:MBP fusions are also easily affinity purified on amylose columns. The pMal-p2 vector was engineered to accept phage DNA encoding pIII-and pVIII-displayed peptides fused to their respective leader sequences. Both types of leader sequence were shown to target the peptide:MBP fusions to the periplasm of E. coli. A streamlined procedure for transferring peptides to MBP was applied to clones that had been isolated from a panel of pVIII-displayed peptide libraries by screening with an HIV-1-specific monoclonal antibody (Ab). By enzyme-linked immunosorbent assay, the Ab bound each of the peptide:MBP fusions and required the presence of a disulfide bridge within each peptide. Some of the peptide:MBP fusions were also analyzed using surface plasmon resonance. Thus, our study shows the value of malE fusion vectors in characterizing phage-displayed peptides.Phage display continues to grow as a technology for selecting peptides that bind to a variety of biomolecules including (Abs), 2 enzymes, receptors, DNA, and RNA (for reviews, see Refs. 1 and 2). The two phage proteins used for peptide display are the minor coat protein, pIII, and the major coat protein, pVIII. pIII is present in four or five copies that are closely © 1998 by Academic Press All rights of reproduction in any form reserved.
1To whom correspondence should be addressed. Fax: (604) 291-5583. jkscott@sfu.ca. 2 Abbreviations used: MBP, maltose-binding protein; Ab, antibody; MAb, monoclonal antibody; ELISA, enzyme-linked immunosorbent assay; SPR, surface plasmon resonance; DTT, dithiothreitol; BSA, bovine serum albumin; NANP, NANPNVDP(NANP) 3 GGPA; PBS, phophate-buffered saline; TBS, Tris-buffered saline; IPTG, isopropyl-thio-β-D-galactoside; RF, replicative form.
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NIH-PA Author ManuscriptNIH-PA Author Manuscript NIH-PA Author Manuscript clustered at one tip of the virion, whereas pVIII is present in thousands of copies that are arranged in a fish-scale-like pattern forming the body of the virion. Thus, multivalency can complicate the determination of the affinity of a selecting molecule for its cognate peptide displayed on either pIII or pVIII. In pIII display, avidity effects are produced by the close clustering of peptides. In pVIII display, the potential avidity effects vary between clones, as there is variation in the level of incorporation of recombinant peptide:pVIII fusions into the hybrid virion coat; this appears to be governed by the rate of processing of the pro-coat (3). Furthermore, in both cases th...