Four isoperoxidases of turnip root and isoperoxidase C of horseradish root were digested with trypsin, and their peptide maps, prepared by high-voltage paper electrophoresis, were compared. All five tryptic digests were completely soluble at pH 8. The maps were developed with a variety of general and specific reagents: ninhydrin, histidine, tyrosine, tryptophan and arginine reagents. Cystine peptides and cysteic acid derivatives have also been characterized. All detected half-cystine residues seemed engaged in disulfide bridges. For each individual peroxidase the number of specifically staining peptides agreed very well with the amino acid composition.The two most acidic peroxidases of turnip, PI and P,, only differ significantly in one peptide. The P, gene is tentatively proposed to have developed from the PI gene by a single base mutation, changing an asparagine residue to a lysine residue. A less acidic turnip peroxidase, P3, is distinct, although related to peroxidases P, and P,. Horseradish isoperoxidase C also belongs to this group which appears to be closely related in the amino acid sequences around four disulfide bridges. Peroxidase P, differs from this group, at least around two of its disulfide bridges, and therefore, ma) differ from the other four in parts of its three dimensional structure.Sequences of particular importance to peroxidase function must be present in all peroxidases. From the peptide mapping studies we only find two highly homologous sequences present in all five examined peroxidases. Both contain histidine. This finding corroborates previous suggestions of two histidine sequences near the peroxidase heme prosthetic group.The rules applied in relating peptides of different proteins are outlined, and the sources of errors in mapping of glycoproteins of high carbohydrate content (about 20 %) are discussed in detail.Plant peroxidases are glycoproteins. About 20 ?< of their molecular weight ranging from 40000 to 50000 is carbohydrate. Peroxidases P,, P, and P3 are acid peroxidase isoenzymes (isoelectric points 3.3, 3.5 and 3.7) and peroxidase P, a basic peroxidase isoenzyme (isoelectric point 11.6) of turnip root [l]. They are previously characterized by carbohydrate and amino acid compositions, and molecular weight by Mazza et a/. [2]. Their studies showed that peroxidases P,, P, and P, are similar and that peroxidase P, differs markedly from the three. Horseradish peroxidase isoenzyme C, the major basic peroxidase of horseradish root (isoelectric point 9.0 [3]), is included in the present peptide mapping studies as reference, since its primary structure is nearly completed [3 -71.Ahhreviaizon. Dansyl. 3-dimethyla1ninonaphthalene-5-sulfonyl. Enzymr.c.. Peroxidase (EC 1.1 1.1.7); trypsin (EC 3.4.21.4).Welinder has previously communicated [5,7] that the only two histidine sequences present in horseradish isoperoxidase C, the basic tryptic peptide T8 [3] and the acidic, disulfide-looped tryptic peptide T9 [6], are very similar to the heme-linked histidine sequences of the globin family mono...