Transalkylation of alkylaromatics catalyzed by acid zeolites is a process widely employed in the petrochemical industry for upgrading aromatic fractions. The reaction mechanism is complex as it can proceed either by intermolecular alkyl-transfer involving dealkylation-alkylation steps with surface alkoxy species as reaction intermediates, or through the formation of bulkier diaryl intermediates. We have investigated how the possible formation of such bulky intermediates in the microporous channel system of different zeolite structures, together with their stabilization by confinement effects, can determine the preferential mechanism and, therefore, the selectivity of ethylbenzene disproportionation into benzene and diethylbenzene. For testing the concept, four zeolites, MCM-22 (3D MWW) with 10R pores, 12R cavities and external 12R hemicavities or "cups", DS-ITQ-2, a 2D MWW with the same 10R channels as MCM-22, no 12R cavities and much larger proportion of external "cups", a 10R ZSM-5 (MFI) and a 12R mordenite (MOR) have been used. The higher activity of DS-ITQ-2 and MCM-22 as compared to ZSM-5, at low temperature (573 k) and the high selectivity to diethylbenzene of the bidimensional material under all reaction conditions considered have been explained by means of DFT calculations. Contrary to what could be expected according to the available space at the external "cups" and at the 10R channels of the MWW structure, the bulkier diaryl intermediates are better stabilized within the 10R channel system than at the "cups" open at the external surface of the MWW materials. We show from this perspective how the channel structure and molecular confinement stabilization also explain the operating reaction mechanism in ZSM-5 and mordenite.