Methanogens are putatively ancestral autotrophs that reduce CO
2
with H
2
to form biomass using a membrane-bound, proton-motive Fe(Ni)S protein called the energy-converting hydrogenase (Ech). At the origin of life, geologically sustained H
+
gradients across inorganic barriers containing Fe(Ni)S minerals could theoretically have driven CO
2
reduction by H
2
through vectorial chemistry in a similar way to Ech. pH modulation of the redox potentials of H
2
, CO
2
and Fe(Ni)S minerals could in principle enable an otherwise endergonic reaction. Here, we analyse whether vectorial electrochemistry can facilitate the reduction of CO
2
by H
2
under alkaline hydrothermal conditions using a microfluidic reactor. We present pilot data showing that steep pH gradients of approximately 5 pH units can be sustained over greater than 5 h across Fe(Ni)S barriers, with H
+
-flux across the barrier about two million-fold faster than OH
–
-flux. This high flux produces a calculated 3-pH unit-gradient (equating to 180 mV) across single approximately 25-nm Fe(Ni)S nanocrystals, which is close to that required to reduce CO
2
. However, the poor solubility of H
2
at atmospheric pressure limits CO
2
reduction by H
2
, explaining why organic synthesis has so far proved elusive in our reactor. Higher H
2
concentration will be needed in future to facilitate CO
2
reduction through prebiotic vectorial electrochemistry.