Izhakiella capsodis gen. nov., sp. nov., in the family Enterobacteriaceae, isolated from the mirid bug Capsodes infuscatus

Aizenberg-Gershtein, Yana; Laviad, Sivan; Samuni-Blank, Michal; Halpern, Malka

doi:10.1099/ijsem.0.000886

Cited by 20 publications

(6 citation statements)

References 30 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…Rosenbergiella nectarea strain 8N4 T belongs to the Enterobacteriaceae family. A neighbor-joining tree based on 16S rRNA gene sequences shows that its closest relatives are plant-associated species: Rosenbergiella, Phaseolibacter and Izhakiella (Lenaerts et al, 2014;Aizenberg-Gershtein et al, 2016a, 2016b (Fig. 1).…”

Section: Resultsmentioning

confidence: 99%

Draft genome of Rosenbergiella nectarea strain 8N4^T provides insights into the potential role of this species in its plant host

Laviad-Shitrit

Izhaki

Whitman

et al. 2020

PeerJ

Self Cite

View full text Add to dashboard Cite

Background Rosenbergiella nectarea strain 8N4T, the type species of the genus Rosenbergiella, was isolated from Amygdalus communis (almond) floral nectar. Other strains of this species were isolated from the floral nectar of Citrus paradisi (grapefruit), Nicotiana glauca (tobacco tree) and from Asphodelus aestivus. R. nectarea strain 8N4T is a Gram-negative, oxidase-negative, facultatively anaerobic bacterium in the family Enterobacteriaceae. Results Here we describe features of this organism, together with its genome sequence and annotation. The DNA GC content is 47.38%, the assembly size is 3,294,717 bp, and the total number of genes are 3,346. The genome discloses the possible role that this species may play in the plant. The genome contains both virulence genes, like pectin lyase and hemolysin, that may harm plant cells and genes that are predicted to produce volatile compounds that may impact the visitation rates by nectar consumers, such as pollinators and nectar thieves. Conclusions The genome of R. nectarea strain 8N4T reveals a mutualistic interaction with the plant host and a possible effect on plant pollination and fitness.

show abstract

Section: Resultsmentioning

confidence: 99%

Draft genome of Rosenbergiella nectarea strain 8N4^T provides insights into the potential role of this species in its plant host

Laviad-Shitrit

Izhaki

Whitman

et al. 2020

PeerJ

Self Cite

View full text Add to dashboard Cite

show abstract

“…The genus is composed of gram-negative, catalasepositive and oxidase-negative bacilli; with the ability to hydrolyze urea and reduce nitrate to nitrite. They do not produce indole, nor H2S [41].…”

Section: Izhakiellamentioning

confidence: 90%

“…Family Genera described during the 21 th century Genera described before 2000 Enterobacteriaceae (Rahn, 1937, Adeolu et al 2016 [10,12] Atlantibacter (Hata et al, 2016) [22] Buttiauxella (1982) Biostraticola (Verbarg et al, 2008) [26] Cedecea (1981) Cronobacter (Iversen et al, 2008) [28] Citrobacter (1932) Enterobacillus (Patil et al, 2015) [36] Enterobacter (1960) Franconibacter (Stephan et al, 2014) [37] Escherichia (1919) * Gibbsiella (Brady et al, 2011) [39] Klebsiella (1980) Izhakiella (Aizenberg-Gershtein et al, 2016) [41] Kluyvera (1981) Kosakonia (Brady et al, 2013) [42] Leclercia (1987) Lelliottia (Brady et al, 2013) [42] Saccharobacter (1990) Limnobaculum (Baek et al, 2018) [46] Salmonella (1900) Mangrovibacter (Rameshkumar et al, 2010) [47] Shigella (1919) Metakosakonia (Alnajar & Gupta, 2017) [48] Trabulsiella (1992) Pluralibacter (Brady et al, 2013) [42] Yokenella ( [8] Coetzeea (Kämpfer et al 2016) [9] Thorsellia (Kämpfer et al 2006) * [7] * Type genus of the family.…”

Section: Biostraticolamentioning

confidence: 99%

Enterobacteria in the 21st century: a review focused on taxonomic changes

Morales-López

Yepes

Prada-Herrera

et al. 2019

J Infect Dev Ctries

View full text Add to dashboard Cite

Introduction: Enterobacteria are the main group causing infections in humans. The aim of this review is to present the new genera and the taxonomic changes that the Enterobacteriacea family has experienced in recent years. Methodology: a systematic search of papers published in databases from January 2000 to July 2018 was done. Additionally, the bibliographic references of each document were reviewed and each paper citing the article was reviewed in search of clinical cases. Results: Nineteen new genera of Enterobacteria have been described since 2000. The genera Yersinia, Morganella and Erwinia do not belong to the family Enterobacteriacea anymore. Conclusions: for an adequate clinical and epidemiological interpretation, it is advisable to update the libraries of the commercial systems used for the identification of the microorganisms, as well as to train the staff in the taxonomic changes of microorganisms.

show abstract

“…The genus Izhakiella belonging to the family 'Enterobacteriaceae' was established and designated in 2016 ( [19], https:// lpsn. dsmz.…”

mentioning

confidence: 99%

“…de/ family/ enterobacteriaceae-1). This genus comprises of two validly published species, I. capsodis (type species) N6PO6 T and I. australiensis D4N98 T [19,20]. Despite the family Enterobacteriaceae being reclassified twice [2,3], the genus Izhakiella still remained in the 'Enterobacteriaceae incertae sedis clade', owing to insufficient genomic analysis of the genus.…”

mentioning

confidence: 99%

Reclassification of genus Izhakiella into the family Erwiniaceae based on phylogenetic and genomic analyses

Jiang

Wang

Kim

et al. 2020

International Journal of Systematic and Evolutionary Microbiology

View full text Add to dashboard Cite

The genus Izhakiella was established and designated as a member of the family Enterobacteriaceae in 2016. Although the taxonomical classification of most members in this family has been relatively resolved after two reclassifications in 2016 and 2017, the classification of the genus Izhakiella remains ambiguous. In this study, a polyphasic approach was used to provide evidence supporting the fact that the genus Izhakiella should no longer be considered a member of Enterobacteriaceae and proposes its reclassification into the family Erwiniaceae . The phylogenetic tree of type species in the families Enterobacteriaceae and Erwiniaceae based on the sequences of the 16S rRNA gene, rpoB housekeeping gene, and the whole-genome comprising the 92 core genes revealed that the genus Izhakiella forms a phylogenetic lineage within the family Erwiniaceae . The average nucleotide identity (ANI) value of the type species with genus Izhakiella was found to be higher for the family Erwiniaceae than that for the family Enterobacteriaceae . Notably, 12 conserved signature indels (CSIs) that are exclusively shared among the Erwiniaceae clade members were found in the type strains of the genus Izhakiella . Based on these analyses, this study suggests the reclassification of I. capsodis and I. australiensis into the family Erwiniaceae .

show abstract

Izhakiella capsodis gen. nov., sp. nov., in the family Enterobacteriaceae, isolated from the mirid bug Capsodes infuscatus

Cited by 20 publications

References 30 publications

Draft genome of Rosenbergiella nectarea strain 8N4^T provides insights into the potential role of this species in its plant host

Draft genome of Rosenbergiella nectarea strain 8N4^T provides insights into the potential role of this species in its plant host

Enterobacteria in the 21st century: a review focused on taxonomic changes

Reclassification of genus Izhakiella into the family Erwiniaceae based on phylogenetic and genomic analyses

Contact Info

Product

Resources

About

Izhakiella capsodis gen. nov., sp. nov., in the family Enterobacteriaceae, isolated from the mirid bug Capsodes infuscatus

Cited by 20 publications

References 30 publications

Draft genome of Rosenbergiella nectarea strain 8N4T provides insights into the potential role of this species in its plant host

Draft genome of Rosenbergiella nectarea strain 8N4T provides insights into the potential role of this species in its plant host

Enterobacteria in the 21st century: a review focused on taxonomic changes

Reclassification of genus Izhakiella into the family Erwiniaceae based on phylogenetic and genomic analyses

Contact Info

Product

Resources

About

Draft genome of Rosenbergiella nectarea strain 8N4^T provides insights into the potential role of this species in its plant host

Draft genome of Rosenbergiella nectarea strain 8N4^T provides insights into the potential role of this species in its plant host