We used a novel microvolumetric technique based on protein diffusion to characterize the subproteome of muscle that consists of diffusible proteins, including those involved in cell metabolism. Muscle fiber segments were mechanically demembranated under mineral oil and transferred into drops of relaxing solution. After the fiber segment was depleted of diffusible proteins, the content of each drop and residual segment was analyzed by onedimensional polyacrylamide gel electrophoresis. Proteins were identified through peptide mass fingerprinting and quantified using purified protein standards. Ten of the most abundant cytosolic proteins, distinguished by their ability to readily diffuse out of the skinned fiber, were glycolytic enzymes whose concentrations ranged from 2.6 ؎ 1.0 g liter ؊1 (phosphoglucose isomerase) to 12.8 ؎ The advent of proteomics, the experimental approach to assess global protein function, has introduced new techniques for studying important subproteomes of cellular proteins that operate in a coordinated fashion. One such subproteome is the entire complement of metabolic enzymes found in a selected muscle cell at any given time. Among these enzymes are those involved in glycolysis, a process by which ATP is generated during the enzymatic breakdown of glucose to pyruvate.Glycolysis is important in fast twitch muscles where ATP, produced at intermediate steps of the glycolytic pathway, fuels contraction and a variety of other ATP-dependent cellular processes. Information about the subcellular distribution, concentrations, and mutual interactions of the glycolytic enzymes and their metabolites is important for a complete understanding of metabolism in fast twitch muscles.In vertebrate fast twitch skeletal muscle fibers the glycolytic enzymes are regarded as soluble components of the fluid myoplasm because they are present in the supernatant fraction recovered after homogenization and centrifugation of the tissue sample (1). However, this assignment has often been a matter of dispute because the supernatant fraction may be only a rough approximation of the cytosol in situ (2-4). Not only are proteins in dilute slurries isolated under conditions far different from those in intact cells, additional information about their interactions may be lost using conventional methods of fractionation. Enzyme-enzyme interactions constitute an area of intense interest in structural genomics and enzymology (5, 6). Clearly studies in these areas would benefit from new approaches for isolation of proteins and determining their concentrations and stoichiometric relationships under conditions more closely approximating their native state. This information could help settle some controversial points debated over the past 50 years, such as whether large supramolecular complexes exist for glycolytic enzymes in the native cytosol (for a summary, see Ref. 5).Warmke et al. (7) pioneered a microvolumetric method of subcellular protein enrichment and fractionation in which cytosolic constituents of muscle were distinguished ...