2003
DOI: 10.1016/s0040-6090(02)01267-1
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Kinetic Monte Carlo simulations of heteroepitaxial growth

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Cited by 23 publications
(21 citation statements)
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“…We have used these local updates in our earlier work, developing an efficient numerical procedure, the Expanding Box Method, to perform these calculations [15,22]. Similar ideas have been used in offlattice simulations [35,36], where this is typically referred to as a "frozen crystal" approximation. The local calculations leave small residual forces at the boundaries, which accumulate over the course of the calculation, and must occasionally be relaxed by performing a full, global solution of the system.…”
Section: Local Energy Methodsmentioning
confidence: 99%
“…We have used these local updates in our earlier work, developing an efficient numerical procedure, the Expanding Box Method, to perform these calculations [15,22]. Similar ideas have been used in offlattice simulations [35,36], where this is typically referred to as a "frozen crystal" approximation. The local calculations leave small residual forces at the boundaries, which accumulate over the course of the calculation, and must occasionally be relaxed by performing a full, global solution of the system.…”
Section: Local Energy Methodsmentioning
confidence: 99%
“…Reactions are nodes of the graph representing the biochemical network and a directed edge from node i to j exists if a product of reaction i is a reactant of reaction j. Storing such a dependency graph enables a straightforward implementation of an O(1) version of steps (5) and (6).…”
Section: Linear Time Algorithmmentioning
confidence: 99%
“…Once a reaction has been performed in steps (4) and (5), the update portion of the SSA-CR algorithm is performed in step (6). The new propensity of each dependent reaction is compared to its old value.…”
Section: Figure 16: Composition and Rejection Algorithm For Random Vamentioning
confidence: 99%
See 1 more Smart Citation
“…Off lattice KMC simulations of heteroepitaxial growth in 1 + 1 dimensions were presented in a series of papers [3,10,12]. Prior to this, off lattice KMC had been used to investigate diffusion on strained surfaces [23].…”
Section: Modeling Elastic Effectsmentioning
confidence: 99%