The removal of FFA in vegetable oils is an important pre-treatment in the production of biodiesel, in particular when the starting materials are low cost feedstocks. Heterogeneouslycatalysed esterification with methanol transforms FFA in FAME, decreasing the oil acidity and producing biodiesel simultaneously. The equilibrium of this reaction shifts towards the desired product when increasing the methanol content but, at the same time, a double liquid phase system forms when the methanol content is higher than 6-8% wt . The presence of a double liquid phase can be an important drawback in the reactor. A detailed study about the optimization of the methanol quantity is presented, both using a batch and a packed bed reactor (PBR) at different temperatures (between 60 and 105 °C) using Amberlyst 46 (ion exchange resin) as heterogeneous catalyst. The deacidification of sunflower oil in a monophasic liquid system leads to satisfactory results (final FFA lower than 0.5 % wt ) for both the reactors. The experimental results demonstrate that the excess of methanol is not convenient in terms of both slower reaction rates and mass of reactant used. The stability of Amberlyst 46 in PBR reactor was positively verified after 600 h of work.