Activated factor XI (factor XIa) participates in blood coagulation by activating factor IX. Previous work has demonstrated that a binding site for factor IX is present on the noncatalytic heavy chain of factor XIa (Sinha, D., Seaman, F. S., and Walsh, P. N. (1987) Biochemistry 26, 3768 -3775). Recombinant factor XI proteins were expressed in which each of the four apple domains of the heavy chain (designated A1 through A4) were individually replaced with the corresponding domain from the homologous but functionally distinct protease prekallikrein (PK). To identify the site of factor IX binding, the chimeric proteins were activated with factor XIIa and tested for their capacity to activate factor IX in plasma coagulation and purified protein assays. The chimera with the substitution in the third apple domain (factor XI/PKA3) had <1% of the coagulant activity of wild type factor XIa in a plasma coagulation assay, whereas the chimeras with substitutions in A1, A2, and A4 demonstrated significant activity (68 -140% of wild type activity). The K m for activation of factor IX by factor XIa/ PKA3 (12.7 M) is more than 30-fold higher than the K m for activation by wild type factor XIa or the other factor XI/PK chimeras (0.11-0.37 M). Two monoclonal antibodies (2A12 and 11AE) that recognize epitopes on the factor XI A3 domain were potent inhibitors of factor IX activation by factor XIa, whereas antibodies against the A2 (1A6) and A4 (3G4) domains were poor inhibitors. The data indicate that a binding site for factor IX is present on the third apple domain of factor XIa.Factor XI is the zymogen of a plasma serine protease which is a critical component of the intrinsic pathway of blood coagulation (1). Human factor XI is comprised of two identical 80-kDa polypeptides connected by a disulfide bond (2, 3). A single proteolytic cleavage in each polypeptide converts the zymogen to the active form of the enzyme, factor XIa. Activated factor XII (factor XIIa), thrombin, and factor XIa have all been shown to activate factor XI in vitro; however, the physiologic mechanisms responsible for conversion of factor XI to the active protease are not certain (2, 4, 5). Regardless of the mechanism of activation, it is generally agreed that factor XIa contributes to coagulation by activating factor IX by limited proteolysis in the presence of calcium ions (6, 7). The factor XIa molecule is comprised of a pair of 35-kDa trypsin-like catalytic light chains and two 45-kDa non-catalytic heavy chains (8). The heavy chain appears to be required for factor XI specific activities including the activation of factor IX (9, 10). Indeed, isolated factor XIa light chain has less than 5% of the factor IX activating activity of intact factor XIa, 1 even though both molecules cleave a chromogenic substrate similarly (9, 11).The human factor XI heavy chain is comprised of four apple domains repeated in tandem (designated A1, A2, A3, and A4), a feature shared with the structurally homologous but functionally distinct plasma protease prekallikrein (PK) (12). ...