• Patients with inv(16) non-typeA CBFB-MYH11 fusions lack KIT mutations and have distinct clinical and cytogenetic features.• inv(16) non-type A fusions have a distinct geneexpression profile with upregulation of genes associated with apoptosis, differentiation, and cell cycle.The inv(16)(p13q22)/t(16;16)(p13;q22) in acute myeloid leukemia results in multiple CBFB-MYH11 fusion transcripts, with type A being most frequent. The biologic and prognostic implications of different fusions are unclear. We analyzed CBFB-MYH11 fusion types in 208 inv(16)/t(16;16) patients with de novo disease, and compared clinical and cytogenetic features and the KIT mutation status between type A (n ؍ 182; 87%) and non-type A (n ؍ 26; 13%) patients. At diagnosis, non-type A patients had lower white blood counts (P ؍ .007), and more often trisomies of chromosomes 8 (P ؍ .01) and 21 (P < .001) and less often trisomy 22 (P ؍ .02). No patient with non-type A fusion carried a KIT mutation, whereas 27% of type A patients did (P ؍ .002). Among the latter, KIT mutations conferred adverse prognosis; clinical outcomes of non-type A and type A patients with wild-type KIT were similar. We also derived a fusion-type-associated global gene-expression profile. Gene Ontology analysis of the differentially expressed genes revealed-among others-an enrichment of up-regulated genes involved in activation of caspase activity, cell differentiation and cell cycle control in non-type A patients. We conclude that non-type A fusions associate with distinctclinical and genetic features, including lack of KIT mutations, and a unique gene-expression profile. (Blood. 2013;121(2): 385-391)
IntroductionApproximately 5%-7% of acute myeloid leukemia (AML) patients have an inv(16)(p13q22) or t(16;16)(p13;q22) [hereafter referred to as inv(16)/t(16;16)]. [1][2][3] This cytogenetic group is usually associated with high complete remission (CR) rates and a relatively favorable outcome, especially when treated with repetitive cycles of highdose cytarabine as consolidation therapy. 4,5 However, 30%-40% of these patients experience relapse. [6][7][8][9][10] We and others reported that the presence of a KIT mutation confers worse outcome in inv(16)/t(16;16) patients. [10][11][12] Molecularly, inv(16)/t(16;16) results in the juxtaposition of the myosin, heavy chain 11, smooth muscle gene (MYH11) at 16p13 and the core-binding factor,  subunit gene (CBFB) at 16q22, and creation of the CBFB-MYH11 fusion gene. 13,14 Because of the variability of the genomic breakpoints within CBFB and MYH11, more than 10 differently sized CBFB-MYH11 fusion transcript variants have been reported. 15,16 More than 85% of fusions are type A, and 5%-10% each are type D and type E fusions. [15][16][17][18][19][20] Fusion types B, C, and F-K have been reported mostly in single cases. [15][16][17][18][19][20] To our knowledge, only one study examined the biologic and clinical significance of different CBFB-MYH11 fusions, but did not characterize the KIT mutation status. 18 Here, we report the ...