Emerging evidence suggests that microbial therapeutics can prevent and treat respiratory viral diseases, especially when applied directly to the airways. This review presents established beneficial effects of locally administered microbial therapeutics against respiratory viral diseases and the inferred related molecular mechanisms. Several mechanisms established in the intestinal probiotics field as well as novel, niche-specific insights are relevant in the airways. Studies at cellular and organism levels highlight biologically plausible but strain-specific and host and virus context-dependent mechanisms, underlying the potential of beneficial bacteria. Large-scale clinical studies can now be rationally designed to provide a bench-to-bedside translation of the multifactorial bacterial mechanisms within the host respiratory tract, to diminish the incidence and severity of viral infections and the concomitant complications.
The Respiratory Microbiota and Viral InfectionsThe human airways represent an important ecological habitat consisting of the upper respiratory tract (URT) (the nose, paranasal sinuses, nasopharynx, and larynx above the vocal cords) and the lower respiratory tract (LRT) (the larynx below the vocal cords, tracheobronchial tree containing the trachea, bronchi, and bronchioles, and the alveoli) [1]. The airways, like the gut, host diverse communities of microorganisms, collectively forming the microbiota (see Glossary), that undergo continuous interactions with each other, the host, and exogenous microbes [1-3]. There are, however, notable differences between the gut and respiratory tract, including significantly lower microbial biomass and biodiversity in the airways and specific epithelial and immune cell types and mucus composition that impact the microbe-host interactions [1,3].The microbiota of the URT and LRT of healthy individuals are a continuum of taxa shared due to processes such as mucosal dispersion and micro-aspiration from the URT to the LRT [1,2]. As has been well-established in the gastrointestinal tract, emerging evidence suggests that endogenous microbial communities also play a pivotal role in airway health through preventing colonization by pathogens and maintaining immune homeostasis [1]. An increasing number of microbiome studies indicate that a healthy URT microbiota includes taxa such as Corynebacterium, Staphylococcus, Streptococcus, Fusobacterium, Moraxella, Prevotella, Rothia, and lactic acid bacteria (e.g., Lactobacillaceae and Dolosigranulum) [4-6]. It is not yet clear which of these taxa are key for maintaining respiratory health. Based on current evidence, Lactobacillaceae [5], Rothia [7], and Dolosigranulum [5,8] are generally associated with health, while the opportunistic pathogens Streptococcus pneumoniae, Haemophilus influenzae, and potentially Moraxella catarrhalis are linked with excessive inflammation and respiratory infection [2,9]. Respiratory tract infections are among the leading global causes of death [10]. Most acute URT infections and cases of bronchiti...