Sugar transport by some permeases in Escherichia coli is allosterically regulated by the phosphorylation state of the intracellular regulatory protein, enzyme IIA glc of the phosphoenolpyruvate:sugar phosphotransferase system. A sensitive radiochemical assay for the interaction of enzyme IIA glc with membrane-associated lactose permease was used to characterize the binding reaction. The N-and C-termini, as well as five hydrophilic loops in the permease, are exposed on the cytoplasmic surface of the membrane and it has been proposed that the central cytoplasmic loop of lactose permease is the major determinant for interaction with enzyme IIA glc . Lactose permease mutants with polyhistidine insertions in cytoplasmic loops IV͞V and VI͞VII and periplasmic loop VII͞VIII retain transport activity and therefore substrate binding, but do not bind enzyme IIA glc , indicating that these regions of lactose permease may be involved in recognition of enzyme IIA glc . Taken together, these results suggest that interaction of lactose permease with substrate promotes a conformational change that brings several cytoplasmic loops into an arrangement optimal for interaction with the regulatory protein, enzyme IIA glc . A topological map of the proposed interaction is presented.Bacteria use a wide range of carbon sources that are transported across the cytoplasmic membrane by a variety of specific transport systems. The phosphoenolpyruvate:sugar phosphotransferase system (PTS), a multifunctional system consisting of several protein components, is widespread in bacteria. The primary function of the PTS is the concomitant phosphorylation and translocation of a variety of sugar substrates from the medium (1, 2). In the case of glucose transport in Gram-negative bacteria, three soluble proteins (enzyme I, HPr, and enzyme IIA glc ) and one membrane-bound protein (enzyme IIB, C glc ) are required for transport. In Escherichia coli, the PTS also regulates uptake of various non-PTS sugars such as lactose, maltose, melibiose, galactose, and raffinose (inhibition of non-PTS inducer transport by PTS sugars is termed ''inducer exclusion''), as well as the phosphorylation of glycerol and the synthesis of cyclic AMP (catabolite repression) (2-6). These regulatory roles of the PTS have been proposed to be mediated by the glucosespecific enzyme IIA glc , and the currently accepted model suggests that the phosphorylation state of IIA glc determines whether or not it binds to a target protein (2).E. coli lactose permease (lac permease) is an important model for the study of membrane transport proteins. Lac permease is one of the most extensively investigated secondary active transport proteins that transduce free energy stored in an electrochemical ion gradient into a solute concentration gradient (7-9). It is a hydrophobic, polytopic membrane protein that catalyzes the coupled stoichiometric translocation of -galactosides and H ϩ . All available evidence indicates strongly that lac permease is comprised of a bundle of 12 transmembrane ␣-h...