Organic matter and its carbon and nitrogen isotopic composition were measured in sequential sediment trap and core samples from the Rochester Basin of Lake Ontario to evaluate their usefulness in reconstructing historic changes in lake productivity. The greatest flux of organic matter from the epilimnion occurred during late summer and coincided with whiting events, indicating that calcite precipitation is an effective mechanism for sedimenting organic matter. Carbon isotopes of organic matter were low prior to the onset of stratification, increased to maximum values in late summer, and then decreased following fall overturn. This pattern is controlled mainly by the timing of stratification and primary productivity, which preferentially removes "COZ from the epilimnion. The physiological effect of decreased carbon isotopic fractionation with decreasing supplies of [CO,],,, may have also contributed to increased PC orgc' Nitrogen isotopes showed a seasonal pattern opposite to that of carbon, whereby S"N values were low during the summer stratified period and high for the remainder of the year. Seasonal variability in S'INorgN probably reflects changes in the source of sedimented organic particles, which is dominated by isotopically depleted phytodetritus during the stratified period and isotopically enriched organic matter from heterotrophic or detrital sources during the mixed period. A comparison of organic carbon accumulation rates and 6'&, between sediment cores collected in 1987 and 1993-1994 confirms earlier predictions that diagenetic processes reduce the mass accumulation of organic carbon in the zone of oxic pore waters, but will not change the S"C,,,,,. values. All cores analyzed for PC,,,, display the reproducible pattern of a progressive increase in the 19OOs, peaking in the early to mid-1970s, and then decreasing to the present. This pattern matches the historical trends of phosphorus loading to the basin, suggesting that 613C of organic carbon is a reliable proxy for paleoproductivity and responds to spring phosphorus supplies in the water column. The 6"N of sedimentary organic matter increased linearly from 1840 to 1960 at a rate of 0.3%0 per decade, and remained relatively constant thereafter except for an increase in the upper few centimeters of sediment. The increase in @N,,,,, reflects a combination of factors, including early forest clearance by Europeans, increased sewering by municipalities after 1940, and increased nitrate utilization as productivity increased in the lower Great Lakes. Increased rates of denitrification in the central basin of upstream Lake Erie from the 1930s to the early 1970s may have also contributed to the rise in P5N,,,, values. Proxy indicators of past changes in primary productivity have long been sought in both marine and lacustrine sedimentary records. In the Laurentian Great Lakes, historical information on nutrient loading and productivity is limited before 1964 (Stevens and Neilson 1987), and thus paleolimnological studies have been used to infer nut...