Ecologists commonly assess ecological patterns at the population level, focusing on the average response of all individuals within a population, but to predict how populations will respond to land‐use change we must understand how changes to habitat differentially affect individuals within a population. For example, forest management is a widespread type of land‐use that impacts wildlife through the loss of key habitat features, but individuals within a population may vary in their responses to this loss due to differences in habitat selection among individuals. Specifically, intraspecific variation in habitat selection has been linked to animal personalities (i.e., consistent behavioral differences among conspecifics), but previous research has not examined whether the relationship between personality and habitat selection is influenced by land‐use change. To address this knowledge gap, we tested the hypothesis that land‐use change alters the association between personality and microhabitat selection in small mammals. Specifically, we investigated two main questions: (1) To what extent are personality type and microhabitat selection correlated among conspecifics? (2) Does land‐use change alter individual patterns of microhabitat selection? To answer these questions, we conducted a large‐scale field experiment over 4 years, contrasting unmanaged forest (control) with managed forest (two silvicultural treatments) in Maine, USA. We examined the relationships between habitat selection and personality traits in deer mice (Peromyscus maniculatus) and southern red‐backed voles (Myodes gapperi). We found that personality traits were correlated with microhabitat selection at multiple spatial scales. Furthermore, land‐use change altered these patterns of selection; resulting in either the loss of personality‐associated selection or in novel patterns of selection in managed forests. These findings suggest that promoting structural complexity at multiple spatial scales, such as by interspersing stands of mature forest with managed stands, may maintain a variety of intraspecific habitat selection patterns and the associated ecological outcomes.